DreEX0066730 @ danRer10
Exon Skipping
Gene
ENSDARG00000094537 | si:ch211-137i24.12
Description
si:ch211-137i24.12 [Source:ZFIN;Acc:ZDB-GENE-060526-36]
Coordinates
chr5:23758430-23767189:-
Coord C1 exon
chr5:23767123-23767189
Coord A exon
chr5:23762900-23763391
Coord C2 exon
chr5:23758430-23761078
Length
492 bp
Sequences
Splice sites
3' ss Seq
TTCTGTTCTTTTCTTGGCAGCTG
3' ss Score
9.86
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
ATGGCTTTCTTCAATCTCTTAGCTTCTAGAGCATTACTTAGTCACCTTTTCCACCCTGCCCTTCCAG
Seq A exon
CTGGGCTCCTTTCTCTCTGTTTGCTTGTAAATGCGAGCATCATCACCAATCACACTCAAACACCCCTCACCATCCTCATCACATCTTCAACAGAGCCTTCACCCGCTCAGCCTGATGATTATCCTTCTGATCCTCAGGGGGCGCTGTATTTACAACAGCCTCCAAAGGCAAAAGCTGTGGAAGGGAAGGATGTGGTGTTACCCTGTTTTTTAAATAAAAGTGATGTGGATGAAGCACATGCTGTGGAGAGGGTGAGGTGGTACATGAAGAATGTGGAGGGACGGAGGACTGTGCTGAATGGAAATAAGACAGTGGGGGACGGGTTTGCCGGCCGTGTGTTTCTGTCTGGTGATCTGTCAATGGGAGATCTTTCCCTGACATTGAGGAACATTTCGGTGGATGATCGAGGCCTGTATCTCTGTGCGTTCATTTCAGGACACTCGACTGTTGTTCAGGGAACCGGGACCAAACTCAGCATCCGTAAAGAGATGG
Seq C2 exon
GTTGGATGGAAGAGTCTGTTGGCATTATAATTGGCATTACTGTGGCAGTAGTTGGCGTGGCAGCAGGACTGGTTGCTGTGATACTGACTCAGTTCAAGAACAAACTTAACTGCCTGCAGAAATGATGCAGGAGCGAATAGCATAGAGTACAGTGGTTTCAGCAAAGGCCAAAGGTAAAAGAAAACAAACAGTACACTGCCAAGACCTGACCAGAGCGCAGAGAATGACCGCAGTGAACGGGGAGACCTTTCACTCAGCCCAGATTGTGAATGATGATATATATACAATTACATACACAGACAGATCAAGTGACCCCCTCAACATGTACACCCTTAAAAATAAAGGTTCTGAAGGGAGTTTCTGCACTAGGGCCACTGAACAGCCATTTCTGCTCCTACAAAGAACTTCACAGTGATCAGTTCTTACAATACGTTTTCTATGAAGAAACGTTTTATAGTCTAAAGAACACACTTTTCTGCTTCCAAAAAGCTTTAGCTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094537-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.145 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0768612=V-set=WD(100=68.5),PF123043=BCLP=PU(37.5=14.5)
C2:
PF123043=BCLP=PD(60.9=92.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTTCCACCCTGCCCTTCC
R:
AGGGTGTACATGTTGAGGGGG
Band lengths:
355-847
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]