HsaEX0042143 @ hg19
Exon Skipping
Gene
ENSG00000204475 | NCR3
Description
natural cytotoxicity triggering receptor 3 [Source:HGNC Symbol;Acc:19077]
Coordinates
chr6:31557559-31560762:-
Coord C1 exon
chr6:31560456-31560762
Coord A exon
chr6:31557752-31557903
Coord C2 exon
chr6:31557559-31557676
Length
152 bp
Sequences
Splice sites
3' ss Seq
GGTCTTCCTTCTGCCCCCAGGAT
3' ss Score
10.83
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
CCACAAGCTGGCCCCTTGGCCTCCTAGAGACCCTGACATCTCCTCCAGCAGCATCTGTCCTCTCTCCTCAGGGAGGCAAGCATTTGATGCTCGAGGTCCCTGGCAGTTGTGGTCCTTGGCAAGTGATGTGTGAGTCCCGTGTGTCATAGGAAGCTCCCCATCCCCATCTGGTGACCAAAGGCCTGGCTACAAGTAGTGAGTCCTTCCTCCTCCACCCAGACCTCACTGCTCAGATCCCCTTCGCCAACTGGGACATCTTCCGACATGGCCTGGATGCTGTTGCTCATCTTGATCATGGTCCATCCAG
Seq A exon
GATCCTGTGCTCTCTGGGTGTCCCAGCCCCCTGAGATTCGTACCCTGGAAGGATCCTCTGCCTTCCTGCCCTGCTCCTTCAATGCCAGCCAAGGGAGACTGGCCATTGGCTCCGTCACGTGGTTCCGAGATGAGGTGGTTCCAGGGAAGGAG
Seq C2 exon
GCTGAGCTGCACATCCGGGACGTGCGAGGCCATGACGCCAGCATCTACGTGTGCAGAGTGGAGGTGCTGGGCCTTGGTGTCGGGACAGGGAATGGGACTCGGCTGGTGGTGGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204475_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.008 C2=0.015
Domain overlap (PFAM):
C1:
NO
A:
PF138951=Ig_2=PU(55.3=92.2)
C2:
PF0768612=V-set=WD(100=94.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCTTGGCAAGTGATGTGT
R:
CTCTGCACACGTAGATGCTGG
Band lengths:
255-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)