HsaEX0042143 @ hg38
Exon Skipping
Gene
ENSG00000204475 | NCR3
Description
natural cytotoxicity triggering receptor 3 [Source:HGNC Symbol;Acc:HGNC:19077]
Coordinates
chr6:31589782-31592985:-
Coord C1 exon
chr6:31592679-31592985
Coord A exon
chr6:31589975-31590126
Coord C2 exon
chr6:31589782-31589899
Length
152 bp
Sequences
Splice sites
3' ss Seq
GGTCTTCCTTCTGCCCCCAGGAT
3' ss Score
10.83
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
CCACAAGCTGGCCCCTTGGCCTCCTAGAGACCCTGACATCTCCTCCAGCAGCATCTGTCCTCTCTCCTCAGGGAGGCAAGCATTTGATGCTCGAGGTCCCTGGCAGTTGTGGTCCTTGGCAAGTGATGTGTGAGTCCCGTGTGTCATAGGAAGCTCCCCATCCCCATCTGGTGACCAAAGGCCTGGCTACAAGTAGTGAGTCCTTCCTCCTCCACCCAGACCTCACTGCTCAGATCCCCTTCGCCAACTGGGACATCTTCCGACATGGCCTGGATGCTGTTGCTCATCTTGATCATGGTCCATCCAG
Seq A exon
GATCCTGTGCTCTCTGGGTGTCCCAGCCCCCTGAGATTCGTACCCTGGAAGGATCCTCTGCCTTCCTGCCCTGCTCCTTCAATGCCAGCCAAGGGAGACTGGCCATTGGCTCCGTCACGTGGTTCCGAGATGAGGTGGTTCCAGGGAAGGAG
Seq C2 exon
GCTGAGCTGCACATCCGGGACGTGCGAGGCCATGACGCCAGCATCTACGTGTGCAGAGTGGAGGTGCTGGGCCTTGGTGTCGGGACAGGGAATGGGACTCGGCTGGTGGTGGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204475_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.008 C2=0.015
Domain overlap (PFAM):
C1:
NO
A:
PF138951=Ig_2=PU(55.3=92.2)
C2:
PF0768612=V-set=WD(100=94.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCTTGGCAAGTGATGTGT
R:
CTCTGCACACGTAGATGCTGG
Band lengths:
255-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development