RnoEX0058721 @ rn6
Exon Skipping
Gene
ENSRNOG00000000854 | Ncr3
Description
natural cytotoxicity triggering receptor 3 [Source:RGD Symbol;Acc:727881]
Coordinates
chr20:5170215-5175313:+
Coord C1 exon
chr20:5170215-5170560
Coord A exon
chr20:5174969-5175089
Coord C2 exon
chr20:5175178-5175313
Length
121 bp
Sequences
Splice sites
3' ss Seq
GATATTTGCTTTCTCCCCAGGAT
3' ss Score
9.54
5' ss Seq
ATGGTACCA
5' ss Score
2.95
Exon sequences
Seq C1 exon
CAAAGGCCTGGTCTTGAACCTCAGAAGGTGAGAGAACCACATCCTCGTCTCACCTACCCAATCTTGTAAAATCGGACACGAGGACATCCTGTCCTACTATACCACCTGTCCACTGGCTGCCTCCAGAGGGTCCAGGCATGTCCATCAGGGCCATCTTTTCTCCTTAGTGGGACATGGCCCAAAGTCCCAAGCAGTGGAGGTTCTTGACAAGTCATGTGTGAGTCCTACTTGTCCTAGGCTCCGGTAGTCGATCCTCTACTTAGACCTCACCACTGAGGTCCGTCCGCTTCGCCAATGGGAGGTATGGCCAAGGTGCTGCTGGTCGTCTTCATCATGGTTTATGCAG
Seq A exon
GATCCTGTGCTGTCTGGGTGTCTCAGCCCCCTGAGATTCGTGCACAAGAGGGCACCACTGCCTCCCTGCCCTGTTCGTTCAATGCCAGCAGAGGGAAAGCGGCCATTGGCTCTGCCACATG
Seq C2 exon
TTCATTAGAGGCCACAAGGCCGGGCTGCTCATACAGGACATCCAAAGCCATGACGCCAGAATCTACGTGTGCAGAGTGGAGGTGCTAGGCCTGGGCGTCGGAACAGGAAACGGGACTCGGCTGGTGGTGGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000854_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.060 C2=0.060
Domain overlap (PFAM):
C1:
NO
A:
PF0768612=V-set=WD(100=94.8)
C2:
PF0768612=V-set=WD(100=94.8)
Main Skipping Isoform:
ENSRNOT00000001139fB9472
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCTTAGTGGGACATGGCC
R:
CGTCATGGCTTTGGATGTCCT
Band lengths:
243-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]