BtaEX6098515 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018343 | NCR3
Description
natural cytotoxicity triggering receptor 3 precursor [Source:RefSeq peptide;Acc:NP_001035614]
Coordinates
chr23:27521474-27523556:+
Coord C1 exon
chr23:27521474-27521530
Coord A exon
chr23:27522934-27523278
Coord C2 exon
chr23:27523449-27523556
Length
345 bp
Sequences
Splice sites
3' ss Seq
TGTCTTCTCTCTGCCCCCAGGAT
3' ss Score
13.35
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GAACACCCTCCGACATGGCCCAGATGCTGTTGTTCATCTTTATCATCATCCGTCCAG
Seq A exon
GATCTTGTGTTCTCTGGGTGTCCCAGCCCCCTGAAATCCGTACCCAGGAGGGGTCCCCCGCCTTCCTGCCCTGTTCCTTCAATGCCAGCCAAGGGAGTTTGGCCATTGGTTCTGTCACATGGTACCGGGACAAAGTGGCCCCAGGGATGGAGGTGAGGAATGAGACCGCAGAGTTCCAGGGCCGCCTGGCCCCTCTCCCCTCTTCCCGCTTCCTCTGTGACCACCAGGCTGAGCTGCACATCTGGGACACCCGAGGCCGTGACACTGGAGTCTACGTGTGCAGGGTGGAGGTGCTGGGCCTGGGTGTCGGAACAGGGAATGGGACCCTGCTGGTGGTGGAGGAAG
Seq C2 exon
GACCTCCTCAGCTAGCGGCTGGCACAGTCCTCCTCCTTCGGGCTGGATTCTATGCCTTCAGCTTTCTCTCAGTGGCTATGGGCAGCAGCATGTATTACCAGGGCAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018343-'2-3,'2-1,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0768612=V-set=WD(100=94.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]