HsaINT0000417 @ hg38
Intron Retention
Gene
ENSG00000154263 | ABCA10
Description
ATP binding cassette subfamily A member 10 [Source:HGNC Symbol;Acc:HGNC:30]
Coordinates
chr17:69193110-69193612:-
Coord C1 exon
chr17:69193493-69193612
Coord A exon
chr17:69193249-69193492
Coord C2 exon
chr17:69193110-69193248
Length
244 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
ATACGTTTCCTCCTCTGTAGGTT
3' ss Score
10.04
Exon sequences
Seq C1 exon
GTAAAAAGAATTATAATGGAATTAGACATGCAAAGCATTCAAGACATTATTGCTAAAAAATTAAGTGGTGGGCAGAAGAGAAAACTAACACTAGGGATTGCCATCTTAGGAGATCCTCAG
Seq A exon
GTGAGAGAAAAAATATATTTTTACAATTAATTTAGATTGAAGGATATACAACTATTATTAAAGTCCAACTTCTACTGTAATTACCAAATGTGAGGGAAAATTTATAATAAAGTACCATGCAAGCTTGTTAGGGATCTGGTGGAGGACTGTATTTGAGTCTAGAAATCATACTTGTTTTCATGGTGCTTTCTGAAGATCCTCACTGTGAAGAGGAAGATGCTTTCATACGTTTCCTCCTCTGTAG
Seq C2 exon
GTTTTGCTGCTAGATGAACCAACTGCTGGATTGGATCCCTTTTCAAGACACCGAGTGTGGAGCCTCCTGAAGGAGCATAAAGTAGACCGACTTATCCTCTTCAGTACCCAATTCATGGATGAGGCTGACATCTTGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154263:ENST00000269081:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(26.5=100)
A:
NA
C2:
PF0000522=ABC_tran=PD(5.4=17.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGGAATTAGACATGCAAAGCA
R:
CAGCCAAGATGTCAGCCTCAT
Band lengths:
245-489
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development