GgaINT1002761 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BSC3]
Coordinates
chr18:8219062-8220163:-
Coord C1 exon
chr18:8219988-8220163
Coord A exon
chr18:8219201-8219987
Coord C2 exon
chr18:8219062-8219200
Length
787 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
3' ss Seq
CACCTGCCCTCACCTTGCAGGTG
3' ss Score
12.72
Exon sequences
Seq C1 exon
GTTCTGCAGTGATTTACAACTACAAGGTATCTGAAGTACAGGATATGGAAGGAATTCAGGCAATGGTTGGGATTTGCCCACAGCTCAATTTACATTTTGAAGCCTTGACGGTGAAGGAAAACTTGAGAATTTTTGCTCACGTGAAGGGGATTCAGTGGAAAGAAGTAGAGCAAGAG
Seq A exon
GTAGGGATGTGCTGCTTGGTCACTGATCTCTGTTTCACAGCATCTTGGACAGTTTGTTGGGCTACATTCATAAAAGATTCTCACCAATACCCTGTTCTGCAGAAATTAGAACAGTTGTAATTTAGAGAAGTGTTTTTAATTCTTTCTTATCCTATTGTCCTGAGAGTCAGAATTCAGATTTGCAGTATTTATCTCGCAGCAAATCCATTTAAAAACATGTAAGCATTAAATACAGAAGTTGTGTTCTCCTGCACTGTGTATGAATCAGAATATGACCAGTTCTGCATGTTCTTGTTTTCATGTGTTCCCAAGGTGCAGAAAGTCCTGGTACAGTTGGACCTCACTGACCTTCAAGATGTCCACGCTGACTCTCTGAGTGGGGGACAAAAAAGAAAGCTGTCTCTTGCAATTGCGATTTTAGGGGATCCTCAGGTAGGCACTGGTCCTACTGCATGCAAACAACAGGCACAATTTTAGCACTTAGTGTGTTGCATTTTGGTTTGGTAGGCAGACATTTGTATTCCTTTGCCCTTGTGCTCTGAAAGCCTGCTACCTACTGACTCACTTGGCTGCCAGGAGGAATGAGGAATCTAGATGAATGAGAACAATATTTTAAATGAAAATGGTAATAATATTCACATAGAAAGGGTAAAAAGATTGAAAGCACAGTAAAAATGACCAGCATTTGAGGATGCATTGTGCTCATTGGGTGAGAGGACAACAAGCGTGGAACAAAGCCATGCCAACACGGCGGCTTGCATGCATGACACCTGCCCTCACCTTGCAG
Seq C2 exon
GTGCTGCTCTTGGACGAGCCAATGGTGGGGCTGGATCCTTGCTCCAGGCACCACGTGTGGGAGCTGTTGGCGGAGCGCCGGGCTGGCCGTGTGACACTCATCTGTACACAGTCTGTGGAGGAGGCTGACGCTTGTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021395:ENSGALT00000034529:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCAGTGATTTACAACTACAAGGT
R:
CACAAGCGTCAGCCTCCTC
Band lengths:
310-1097
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]