HsaINT0000419 @ hg38
Intron Retention
Gene
ENSG00000154263 | ABCA10
Description
ATP binding cassette subfamily A member 10 [Source:HGNC Symbol;Acc:HGNC:30]
Coordinates
chr17:69191176-69192653:-
Coord C1 exon
chr17:69192563-69192653
Coord A exon
chr17:69191316-69192562
Coord C2 exon
chr17:69191176-69191315
Length
1247 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
TGGCTCTTTTGAAATAATAGTTT
3' ss Score
1.34
Exon sequences
Seq C1 exon
ATAGGAAAGTATTTCTGTCTAATGGGAAGTTGAAATGTGCAGGATCATCTTTGTTTCTGAAGCGAAAGTGGGGTATTGGATATCATTTAAG
Seq A exon
GTATGTATTCTAGGTGTAGTTATTTTTAAATGAGCATATTAATATGAGGGTGACATTTTGTAGAAGCCTTTAGAAATATAAGAAAGGCAACTTAACTTCTGGTAGAAACTGTTTTGCAATAAACAGCTCAAAATGTCTTCCTCATTAACATTTCCTTTCTTGGTTATCTCTTGGTTTTAAGCATGCTAATTAAAAAACAAAGTATACTTCTTAATACAACTTTTTTGTTTGTTTGTTTGTTTGTTTGTTTTTTTGAAGACACAGTCTCGCTCTGTTGCCAGGCTGGAGTGCAGTGGCTGCAACCTCCAACTCCCTGGTTAAAGCGATTCTCCTGCCTCAGCCTCCCGAATAGCTGGGATTACAGGCATGCGCCACCATGCCCAGCTAATTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGATGGCCTCGATCTCCTGACCTCGTGATCTGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCGCCCGGCCTATACGACATTTTTAAGCCAATATTTGTATAGAAAAAAATTATCTTTATGTCCTCAATAAGCCATTGTTTACTTTTAGCAAAACAATTTGGCCTAAATTTCTGTAGTTATATTCCAAATCTAATTGATAGAATGGCAGAATATCACATGGGAACATTTTAGAAAGCATCAAATACTCACAAACAAGCTCTGCAAATAGAAGTTGTTGACATTAAGAGAAACCACTTAATGCATAGAAAGCAACTGTTTATTAAAAACCTTATGAATTTTCCAGTTATTCAGAAGCAATGTTTCATGTATCTTATATCCTATCATGATTGTTTTTTATGTATATCACACATGTAGCACAATAATGATAGTTTTATATATGTATATATACACACACATAAAATAACTTTTATACACATGTATTTGCATGTGTGTATGTGTGTTTGTGTATGTGTGTATGTATGCTAAAATGTCACTGTGCTTTAGTTACATTTAAAGGAATTGGTGTTGATATGTACTATAATTTTTCCATTTGAAATAATGCAAAATAGGCTACCAATTAGCACTTTGAAGTTGAATTAGCAATTTGAAGTGGAGTATCTGATTTGCAGGAACCAATTACTAGAGTTAAGTAGAATATGCCTGTAATACATATAAGCTGTTTAATAGAAAACTATCTTTTCATGAGTGGTGGTGTTGGAAAAGAATTCAAGAGACTTATGGCTCTTTTGAAATAATAG
Seq C2 exon
TTTACACAGGAATGAAATGTGTGACACAGAAAAAATCACATCCCTTATTAAGCAGCACATTCCTGATGCCAAGTTAACAACAGAAAGTGAAGAAAAACTTGTATATAGTTTGCCTTTGGAAAAAACGAACAAATTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154263:ENST00000269081:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAAGTATTTCTGTCTAATGGGA
R:
TCCAAAGGCAAACTATATACAAGTTT
Band lengths:
209-1456
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development