RnoINT0010442 @ rn6
Intron Retention
Gene
ENSRNOG00000004147 | Abca8a
Description
ATP-binding cassette, subfamily A (ABC1), member 8a [Source:RGD Symbol;Acc:1307333]
Coordinates
chr10:98363466-98364325:-
Coord C1 exon
chr10:98364235-98364325
Coord A exon
chr10:98363606-98364234
Coord C2 exon
chr10:98363466-98363605
Length
629 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
TTTCAATTTTTGAATAACAGCTT
3' ss Score
4.74
Exon sequences
Seq C1 exon
ATAGGAAAGTGTTCATCTCCCAGGGGAAGCTGAGGTGTGCAGGATCTTCCTTGTTTCTGAAGAAAAAATGGGGGATTGGTTATCACTTAAG
Seq A exon
GTAGGCTTTCTAGGGGGAGGTGGGGGTAGATGAGAACTGGGCTGGAGAAAAGGGTGGTCCTGGGGGAATCATTGCAAGAAAGGAGGCTGGCACAGAGATGGGGAAGAGTTAAGAGGAACGAACAGGGGTGGGGACACAACTGGAATCGTATATGCATATGAAAATTGCGAAGAATTAATAAAAATATATTTTGAAAGAAAATTCATATGTGTATAAATGTGTGTGTACATGTGTATACGTGTGCACACCTGTGTGCAAGTAGGAGGAGGTAAAGGGTGAGAGGGTGGGGAAGACTGGAATAGAAGATACCTGGCCTACCATAGAGGAAGTATGAGAAAAACCAAGCAAAGAAGTTAAATGTCGACCGTATTTGGTTATTCCAATGTCCCACAACTTTTCCAAACCTGACAAGACTGTATTTAACCTCATTATTACCATTAACCCAGAATAGTAATACTGTCTCTTAACTAAGGTCCTAGTTTGCATTGACTGATTTAGCTCTTTATTTCGTTCAGCTTTGCATGACTTGGTTTTTTTTATATCAAATTTATAAATGCTCTTCCCTGGTGGTTAGTTTTGGATGCCAGAGACTATTTTTCAAACAACCTCTTTCAATTTTTGAATAACAG
Seq C2 exon
CTTGCAGCTGAGTGAAACGTGTGTGCACGAAAGAATAACATCGCTCGTCAAACAGCACATCCCCGATTCCAAGTTGTCGGCAGAAAGCGAAGGGAAACTGAATTACATATTACCCCTGGAAAGGACAAACAAATTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004147:ENSRNOT00000005665:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.003
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGGAAAGTGTTCATCTCCCAGG
R:
CTGGAAATTTGTTTGTCCTTTCCAGG
Band lengths:
230-859
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]