HsaINT0000439 @ hg38
Intron Retention
Gene
ENSG00000154263 | ABCA10
Description
ATP binding cassette subfamily A member 10 [Source:HGNC Symbol;Acc:HGNC:30]
Coordinates
chr17:69152362-69153399:-
Coord C1 exon
chr17:69153305-69153399
Coord A exon
chr17:69152482-69153304
Coord C2 exon
chr17:69152362-69152481
Length
823 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
3' ss Seq
ATCCCTTACTTTATCTTTAGGCA
3' ss Score
9.28
Exon sequences
Seq C1 exon
CTGTGCTTTGTGCTGAGCATCCTGGGGAACCCATCAGTGGTGCTTCTAGATGAGCCGTTCACCGGGATGGACCCCGAGGGGCAGCAGCAAATGTG
Seq A exon
GTAAGGAGAGTGAATATTAAGTGTCAGAGTCAAGAGAATACCTCTAGGATATTTTGTTTTTGTTTTTGTTTTGTTTCTTTGTTACATTTTGCTCCATTAACCTTTGATGTGCACATCTTCTATTATGTAATTCAGTGAAACCTAATATAGCATTCAAAATTCCTGCAGGAGGGAAAAAATAGATATTTTAAGACCCAAATAAACTCTTGATTATATTTGTTTGGATTTCTCTTTCTTATTCCTCTTCCCCCTGTCTTTTTATTTTTCCATTTCATTTTTCAGTTATTGAAAGTCATATAGTATGATGTTTCTGTATTTTTTACTCCAACTTTCCTACTTTTCTTCCCCAATAGTGCATTATTTTAACCAATACTCTTCTTTTTTATGAAGCCTATTAATATGGTACTATCATTAGGCAATATAACACAATTTCTATTCTTTTTCTCTATGGCAAAGATTTTCTCTTGTAGCCTATTTATTTATTTATTTATTTATTTATTTACTTAATTGTATTACTTGACACAGGGTCTTTCTCCATCACCCAGGCTGGAATGCGGTGGTGCAATCACAGCTCACTGCAGCCTCGACCTCCTGGGCTTAAGTGATCCACTCATCTCAGCCTCCCAAGCAGCTGGGACCACAGGCATGTGCCACCATGCCTGGCTAATTTTTAAATTTTTTTGTGGAGATGGGGTTTCACCATGTTGCACAGGTTTCTTGCATCCTAACATAACATTTTCTCTTTAGATTTCCTGCTTTTTTCTATTTATCTATTTCCCCAAATTACTTTCTAAATGCAAACAATCCCTTACTTTATCTTTAG
Seq C2 exon
GCAGATACTTCAGGCTACCGTTAAAAACAAGGAGAGGGGCACCCTCTTGACCACCCATTACATGTCAGAGGCTGAGGCTGTGTGTGACCGTATGGCCATGATGGTGTCAGGAACGCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154263:ENST00000269081:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(13.6=62.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGCTTTGTGCTGAGCA
R:
TTAGCGTTCCTGACACCATCA
Band lengths:
214-1037
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development