GgaINT0127082 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:7943829-7944668:-
Coord C1 exon
chr18:7944574-7944668
Coord A exon
chr18:7943946-7944573
Coord C2 exon
chr18:7943829-7943945
Length
628 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
3' ss Seq
CATGATCCCTCTGTTCCCAGGAA
3' ss Score
10.05
Exon sequences
Seq C1 exon
CTGTGTTTTGCACTGAGCATCCTGGGAAACCCAACGGTGATGCTTTGGGATGAGCCAACAGCAGGCATGGATGTGGCAGGGCAGCGCTGTCTGTG
Seq A exon
GTGAGCAGTCCCTGGCTTGGGAATGGCTGGGCAAGAAAGGGCCCCTTGGTGCCTGCGGTTGTCTGTGTTACCCCAAAGCACAGGGGTTGGGTACCACTCACCAGACTCCTCACCCAGCAGGCAGTAAGCCTTTGCCAAACCTCATATTGAATCTTAACAAAAAATAAATATATATGAGCAGACTCCATCTGAACCCGTGCATTTGGCAGAACAAAAAAAGATAAAAATCTTTACTTCAGAGCATGAGAAAAAAATAAGAGGTAGTCCTTCCCCTCCATCATTCAGGTTTAGTGTTTTGTTATCATTTTTCTACGACAGTTTTACCTGGAACTGTAAAATTTGGATGGCTGTTGACATGACAAATTGCAGTGTAGAGTTAGCATCCACTTGTCATCTTCAAGCAGGATGGATGAAACCTTCTAAATAATGATGGCTTTATTATCACATAGGATCAAGGGATCATTAAGGTTGCGAAAGATCACTAAGATCACCGAGCCCAACCATCAGCCCAACCCCATCATGCCCACTGACCGTGTCCCTCAAAATTTAATTATTCCTTGTCCATTCTGGGTTGATTTTATTATTCCTTGGCTGTCCCATGAGGTAACCATGATCCCTCTGTTCCCAG
Seq C2 exon
GAAAGCAATCCAGGCTGCTGTGAGGAGCAAGGAGCGTGCAGCTGTGCTCAGCACGCACTGCCTGGAGGAGGCGGCGATGTGTGACCGCGTGGCTGTGCTGGTGGCGGGGCAGCTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021395:ENSGALT00000034529:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(19.0=62.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]