HsaINT0000441 @ hg19
Intron Retention
Gene
ENSG00000154263 | ABCA10
Description
ATP-binding cassette, sub-family A (ABC1), member 10 [Source:HGNC Symbol;Acc:30]
Coordinates
chr17:67146125-67148324:-
Coord C1 exon
chr17:67148184-67148324
Coord A exon
chr17:67146205-67148183
Coord C2 exon
chr17:67146125-67146204
Length
1979 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
CTCACTCTTCTTCCTGACAGATA
3' ss Score
10.92
Exon sequences
Seq C1 exon
GTGTATTGGTTCCATTCAACATCTGAAAAACAAGTTTGGTAGAGATTATTTACTAGAAATAAAAATGAAAGAACCTACCCAGGTGGAAGCTCTCCACACAGAGATTTTGAAGCTTTTCCCACAGGCTGCTTGGCAGGAAAG
Seq A exon
GTAAAGGATGTTTTCGGTTTGAGTGACAAGTATGAGTGTTTTCCAGTATTAGCATCAATTAGTTTTGTGCTAGTCTAAACCGGAAGAGAAAGGCAGAGTGGACTTATTCATCACAAAACAACCTGTTTGAGGATTGCTAGGATGCGTTACAAAAACTAAACAGTTATTTTCAGTGAGTGTTTTAGACCTCAGAAAAGGTGAATGGTGTGTGTGTGTGCATTCATATATGTGTGTAAATGGTGGAATGGCTTGGAGATTAAGAACAAAGTACAGACAAATTAAACTATCAACTTTTTAATGATTTTTAAAAAATAGACAATGAAAACAATGCTTTCACCTACAGGATTTTGCTGAATATAAATTGCATCAAGAGCTCCGTAACACAGACTTCCATGCTTGAGAAGGATTGACTCTATCCTAAATTATTCAATTATAAATCATTTGATCCTCCCAATGTTTCTTTTAAAGTTGTATGTGGTCAACCATGTGTTACAAGTAATGGTAATCAAACCCTTGTGAATAGCAGAATGAGGCTGAATTTAATTGAAAGATGAACAGAATTTTCTTGTATACCATTTCTACTCATTTATTTTTATAATATTTGTTATATTTATTGAATACGTATTATCTGCTGCCGGCTGTGTATTGAATAGTCAACAAAATAGACAAGGTTCTTCCTTTTGGAGGTGAAGATATTAAGCAAATGAAGATACAAATAAATGAGGATATGACATTGAGGTAGGACTTTAAGACTGAGCAGGGTTTGGTCAGCTGAAGAGTGGGAGTAACAGACACTGTTTCCAGGAAACAGCACATTTAAAGAACTTAGGTCAAGAATGAATTCTACAAATGTCAAGGATGAAACAAAAGCTCATGTAGTTGATGTGTAAAGAGATATCCAAGTGGAGATGCCAAAGTAAGAGATGTAGACCTGTGGCTCACAAGAGAAGGAAGAGGTCATTGAGATCTGGTCTGGCAACAAACAAAGTGGGGGATTTTTTTTACCATATAGAAGACCATTAAACTAGGAGAATGTTGAGGCCAACAAGAGAGATAGGAAGTCGGATGAACCCCAGGAGCTCTCAGCTTTGAGATGGGATTGAGGAAGAAAATAAATCTTCCTGTGTGGACAGTACCACCACAACCATACCAACAAAGACTGAGGAGTATCTAGAACAGCATTGGCCAGTAGAATTTTTGTGATAATGAAAATGTCCTTTCTGTGCTGTCCAGGATGGTAGTCACTACACATACGTAGCTACTGAGTACTTCAGATGTGGCTGGTGTGAATGAGGAGTTGAATTTTCAATTTTATTTATTTTAATTACTTTAAATAGCCACATGGATTTAATAGCTACTCTATTAAGCAGTGCAGGCCTAGAGAGTTAGAAGGAAAATCGTAAGTGTGGTTGTCTCAGAAGCTAAGAGAGAAAGAGTATGTTTGTTTTAAGGAGGGTGTGTACAATTTTATTTAATGCTTTTGAAAAGTTTGCAAAATGAGGACTGAAGAGTGTTCCTTGGATTGTGCAACATGAAAGGGGGTCTGAAGGTCAAGAAAAAAATTTTTTTTTAGCAGGAGAGAGTTCAACATATTTTAATTTTTATAGGAGAGATTGAAAATTAAATCTCAATCTCTCCTATGAGAGAGGGGAAAGGTAATGTAAACATTCTAGAAAGGTTGCTTTTTGAGAGTAAGTAAGAAATATAGCACAATAACAAAGTGCAGGCTGAGTGGGAAAGATTCTTAATCAGAGCTATTTCTCAGAATTTATCTTTAACATAAAATTAGAGGCAACCAGATTTTTGTTGTTATAACTTTTTTTATGATTGAATCTGTAATTTCACACTGATTCATGCTATATCAAATCAGACACTTATTTAAAGAACACATTGAAAAATTATTTTACTTTGCCTATTAATTCCTCCCCCGTATTATCACACTGAAACTTAGTAATAAATCTCACTCTTCTTCCTGACAG
Seq C2 exon
ATATTCCTCTTTAATGGCGTATAAGTTACCTGTGGAGGATGTCCACCCTCTATCTCGGGCCTTTTTCAAGTTAGAGGCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154263-ABCA10:NM_080282:37
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTATTGGTTCCATTCAACATCTGA
R:
CGCCTCTAACTTGAAAAAGGCC
Band lengths:
220-2199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)