BtaINT0010867 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006937 | ABCA10
Description
ATP-binding cassette, sub-family A (ABC1), member 10 [Source:HGNC Symbol;Acc:HGNC:30]
Coordinates
chr19:62003743-62006510:+
Coord C1 exon
chr19:62003743-62003883
Coord A exon
chr19:62003884-62006430
Coord C2 exon
chr19:62006431-62006510
Length
2547 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TCCCTCTTTCCTCCTCCCAGATA
3' ss Score
11.2
Exon sequences
Seq C1 exon
GTGTATCGGTTCTGTTCAGCATCTGAAAAGCAAGTTCGGCAAAGACTATTTACTGGAGGTGAAGGTAAAGGCGCTCACCCTGGTGGAGCCTCTGCACATGGAGATTCTCAAGCTCTTCCCCCAGGCTGCTCGGCAGGAGAG
Seq A exon
GTGAGGGCCGCCCCAGGTGTGAGGCCTCCAGCACCCACGGCCTCGGCTCGTCCAGAGGATGGGAAGAGGGAGCCCCGGCGGCCTGTCGGTTACAAACAGGCTGTGGAGGGGCCACTAGGAAGGAGGGAGGGGCCTCCCTCGCCGCCCAGCCGTAAAGAGTCTGCCTGCGATGTGGGCTTTGATCCCCGGGTCGGGAAGATCCCCTGGAGGAGGAAATGGCAACCCTCTCCAGTATTCTTGCCTGGGGAATCCCATGGACAGAGGAGTCCGGTGGGCTACGGTCCATGGGGTCGCAAAGAGTCAGACATGACTGAGCAGCTAAACAGCAACAAGGACACACAGGAGACAGACAACACCTGAAAGTTATTCTCAGTGAGTGTTTCGTATTAATGGGTGGACAGTATGCGTGTCCGTGTGTGTGTGTAAACTGTGGAATGACAGAGATTAGGGGGAAAGTACAAGCTTGATCATCAATTTAATGGTTTTTTTAAACAGACAATGAAAATTCTGTATCAGTCTATAACATTTTACCAAATACGAAATCACACCAAGAGCTCGAACAGACTCACATGCCTCAGAAAGGCTGACTTTGCCTTAATGGGGGGGGGGGTGGGGTTTAAGATGTCCCTGGGGATTCTGCAGGCAGGAATGCTGGAGTGGGTTGCAGTTTCCTGCTCCAATTGGGGTTTGGATTTATCTCTCCCACTAACCTCTTTGGCCCCGTCAGCTCTTAGTCACAGCCACGGGCTCTTCCCCGACTCTCGTGGACTCTTTGTTGTGGCCCGAGGACTCTAGCTTTGGCTCGTGGTCTTAGTTGCTCCTAGGCATGTGGGATCTTAGTTCCCCAATCAGGGATCAAACCTGAGCCCCCCTGCATTGCAGGGTGGATTCCTAAACCCTGGACCACAGGGAACTTCCCTGACTCTATCTTAAATTAATTGACTATAAATAATTTGATCCTCCCTATAGTTCCTTTGGGCTTCCCTCGTGGCTCAGATGGTAAAGAATCTGCCCGCCATGTAGGAAATCCAGTTTCAGTCCCTGGGATGGGAAGATCCCCAGGATGGGAAGATCCCCCTGGAGAATGGAATGGTTCCTTTAAAGTTGCGTGAGGTCAGCTGTGAGTTACAAATAAAGATAAGCAAACCCATGTGAATAGCAGACTGAGCCAGAATTTCATTGAAAGGTGTACAGTTTTCTTACATACTACTACTCTTTTTAAAAACTATTACTTATGAGCACATATCGTGCTGGAGGCTGGACACTGTGTATGGACTAGATAGATAGACGAGGTTCTTACGGTGCTTGAGTCCTTTTGAGGAAAGAGTATTAGCAAAGGAAGATGCAAATGAATGAGGGTTAAGGGTGGACTTTAAGGCTGAGCAGGTTTGGCCGGTGGAAGAATGGGGATAAGAGTCACTCTTTTGAGAAAACATCACGTGTAAACACTCAAGAGTGAGCTCTGTGCACAGAAGATGGAGAGAAAGCTCATATCCATGATGTGTAAGGAGATGTCTGCACATTTGTTCTCTACCTGTGTCCCTGTTTCTGCTCTGCATATAGGTGTCTGTACATTTGTTCTCTACATGTGTGTCTCTGTGTCTGCTCTGCAAATAGGTTCATCTGTACATTTGTTCTCTATATCTGTGTCTCTGTGTCTGCTCTGCAAATAGGCTCATCTGTACCATTTTTCTAGATTCCACGTACATGCGTTAATGTACGATATTTACTTTTCTTTTCAAGGGGGAAGGGGCTGTGGGGTGAATTAGGGAGATGACTGATAGTATGTATAAAATAGACAATTAATGAGAACCTACTGAAGATCACGGGGAACCCTACTCAGTGCTCTCTGGTGATCTAATGGGAAAGAAATGCAAACCAGAGGGGATAGGATCTGTATCCATATGAGGCTGATTCATTCTGCTGCACAGCAAAGACTAACAACAGTGTAAAGAACTGTCTCCAGTGAAAATTAACTTAAAAACCCCCAAGGACGTAATAAATAAAAAGGAGAAAGTTATTAAGTGTGTGTGAATTTGATTCTTTTGAGAAGTCTAAAGGAGAAGGACCAAAGAATGTTCACTGAATTGTGCAACATGAGGTCCCGGATGGACATATTTGGGAAGGCTAGAGGTCAGGGAAGAATTTTTTAAAGGGAGAGAGCTCTACAAGTTTTAATTCTTGTACAAAAGATTGAAAAGAATAAAATTTGATTAAAAGGTTCCAGGGAGCATAGAAAGATTGGCTTTTGAGAGTAAGAAATAGAATACAAAAGAAAGACACCACAGGCCAAGTGTGAAAGTGTATCAGAGTGATTTTTCAGAATTTATCTTGAACAGTAAGTTAGGGGCAAGCAGATTTTTGTCCTAATCAGATTTTTATGACGAAAGATAATTTTTTGGCTCAGATTCATGTTTTATCAAATTAAACTATTCGCCTTTTATTTAAAGGAAACGTTTAAAAAATTCTTTGGTTATTTTAGCTGTCAAGACCTTCCCAGTATTGTAATGTTGAAGGATAGTAACTCTCCCTCTTTCCTCCTCCCAG
Seq C2 exon
ATATTCGTTCGTGATGGCATATAAATTAGCCATAGAGGATGTCCACCCTCTGTCTCAGACCTTTTCCAAATTAGAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006937:ENSBTAT00000040376:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development