GgaINT0129166 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NW73]
Coordinates
chr18:8185810-8186296:-
Coord C1 exon
chr18:8186156-8186296
Coord A exon
chr18:8185890-8186155
Coord C2 exon
chr18:8185810-8185889
Length
266 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACT
5' ss Score
8.77
3' ss Seq
TTTTCTTCTTTTTCTTCCAGGTT
3' ss Score
12.95
Exon sequences
Seq C1 exon
GTGCATTGGCTCCATTCAGTACCTGAAGAACAAGTTTGGCAAAGGCTATCTGCTGGAAATTAAAGTCAAGGACCCAGAGACCACTGATCTTCTCCATGCTGAGATTCTGAGGATTTTCCCAAGCGCTGCCCGTCAGGAGAG
Seq A exon
GTAACTACAAAATAGGGAATGAAGAGTGACTTCAGTATTACATCATCTCTAAAAGCCTGCCCCGTGGGATGGCCAAATACAGGATCTCAGCTGCAGAGAGATCTATGCGTCAGAGTCCCAATGAGGTGACCTTATTCAGTAATGCCACCAAGTCCAGCCCTGCTGCTATCCCCACAGTAAAACATCCATAAGTCCAGCTCCCACTGTAACAAACTTCTGAATGCAGAAGTTCAATCTAGAGTCCCCTTTTCTTCTTTTTCTTCCAG
Seq C2 exon
GTTCCCCTCTTTGCTTGTCTACAAGGTCCCAATGGAAGATGCACTGCCCCTATCTCAGTCTTTCTCCAAGATAGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021399:ENSGALT00000006909:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCATTGGCTCCATTCAGTAC
R:
TCTTGGAGAAAGACTGAGATAGGGG
Band lengths:
212-478
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]