MmuINT0008102 @ mm9
Intron Retention
Gene
ENSMUSG00000020620 | Abca8b
Description
ATP-binding cassette, sub-family A (ABC1), member 8b [Source:MGI Symbol;Acc:MGI:1351668]
Coordinates
chr11:109797030-109797796:-
Coord C1 exon
chr11:109797656-109797796
Coord A exon
chr11:109797110-109797655
Coord C2 exon
chr11:109797030-109797109
Length
546 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAAG
5' ss Score
7
3' ss Seq
TGTTCTCCCTCTGTTCCTAGGTA
3' ss Score
12.61
Exon sequences
Seq C1 exon
GTGTATTGGATCCATCCAACATCTCAAAAGCAAATTTGGCAAAGATTACCTGCTGGAGATGAAGGTGAAGACCCTCGAGCAGGTGGAGCCCCTCAATACGGAGATCCTCAGGCTTTTTCCCCAGGCTTCTAGGCAGGAACG
Seq A exon
GTAAAGTTGCTCTTTGGTTTCGATCTGATACCGAACGTTGGTTTCCCCCTGTCAGTTATACTGGTTTGTAGTCAGTTGAAAGGAAACGTGGCAGAAAAATTACTCGATAGATATCTGATGGAAAGCAGAGAAGATAGAGCTGATGTAAAAGCAGATGTACCATATATTGTGGCCCTACTATGTGCTATGTCCCATCCTTGGCTTGTATAATCTCTTTCTCATGAAGACTTTTCGGGATCAAGATTGTCATTCTAAACTAAAATAATATGTTTAAGGGACTAGAAGGTAATTCAGGGTTAAGTGTTTGCTGTACAAGCATGAAAATATGAACGTTACTCAACACCCACATTAAAAGCCCAATGTGATTGCACAGTCCTGTAATCCCTACACCAAGAGTGGAGGCAGGTAAATCTTGTTCTTTTGATAGCCAACTAGAGAGTAGATATGTTGTTAACAACTCTTAGTCCTGATTAAAAATAACAACAGTTGAGTAGTGAGGTTGTAATGAGTTTAGTCCTAGCTGATGTGTTCTCCCTCTGTTCCTAG
Seq C2 exon
GTACTCTTCTCTGATGGCTTACAAATTACCAGTGGAAGCTGTACAGCCTTTATCCCAAGCTTTCTTCAAGTTAGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020620-Abca8b:NM_013851:36
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCCATCCAACATCTCAAAAGC
R:
CTTTCTCTAACTTGAAGAAAGCTTGG
Band lengths:
214-760
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: