RnoINT0010503 @ rn6
Intron Retention
Gene
ENSRNOG00000059326 | Abca9
Description
ATP binding cassette subfamily A member 9 [Source:RGD Symbol;Acc:1305931]
Coordinates
chr10:98415843-98416806:-
Coord C1 exon
chr10:98416666-98416806
Coord A exon
chr10:98415923-98416665
Coord C2 exon
chr10:98415843-98415922
Length
743 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
ACCTTCTCTCCTCTTCACAGGTA
3' ss Score
12.74
Exon sequences
Seq C1 exon
GTGTATTGGTTCTATCCAACATCTAAAGAGCAAATTCGGCAAAGATTACCTGCTGGAGATGAAGTTGAAGACCCCGGCTCTGGTGGAGTCGCTCAACACGGAGATCCTGAGGCTCTTCCCCCAGGCTGCTCGGCAGGAAAG
Seq A exon
GTAATGTGAGTGTATTCTTTTAATCTTTATTTTGGTGGGGGTTTGTTTGTTTGTTTCTTTGTTTGTTTTTTTTAGAATAATGAGAGATGAGAGATCTATCCTCTCATTGTTTTTAACTTCAGCAACTGTGGGTATCGTCATTACTATGAGAGAAACCTGTCCCAAGGGCTGCCACAGGAAATAAAAAGGACCATACATTTCCTCACTGGAGGCTGGCTCTGGTGAGGAAATTAGCATTTGTGGGACACTGAAGTGTGTCCGAGACTACTGTATTTTTATGTTTGTATTATCTCAGTGGCCCTTGCCGTGAGGGCGAACCATCCATATTAAAGGAGGTGCCCTGACAGAGCTCAGTGCTGGTTCTAGACAGCCCTCAGAGTTCCATGAATGGCCACTCTCAGCAGTTGTATTAGTCCTGGTGCTTGGGGCTTGGGTAGATTAGGTAATAACACATAACTCACAGTTTCTGTTCGTACATTCTCGTTTTCCTAAGATGGATGAACAGTCTTGTTCCCTCCCTTCTTAAGGCACCATGCTACTGGGTTCCTCTCTTGTGTCCCCTCTTCCTCCTCATAGACAGGGACTTATTGTTGGCCAGAAGAGCACTTGGACTACAGTCATCTCCAAGTCATAAGATGTACATTTATGCAAATAGCTGACAGGATTATTATTTATATTCAGAAATACACTCATCAAGGTTGCAACCTTGAAACCCAGTATTCAACCTTCTCTCCTCTTCACAG
Seq C2 exon
GTACTCTTCTCTGATGGTCTATAAGTTGCCTGTTGAGGATGTACGACCTTTGTCCGAGGCTTTCTTCAAATTGGAGAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059326:ENSRNOT00000087502:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTCTATCCAACATCTAAAGAGCA
R:
TCTCTCCAATTTGAAGAAAGCCTCG
Band lengths:
214-957
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]