HsaINT0001891 @ hg19
Intron Retention
Gene
ENSG00000159842 | ABR
Description
active BCR-related [Source:HGNC Symbol;Acc:81]
Coordinates
chr17:1003877-1012324:-
Coord C1 exon
chr17:1012174-1012324
Coord A exon
chr17:1003976-1012173
Coord C2 exon
chr17:1003877-1003975
Length
8198 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
3' ss Seq
TGTGCTTTGCGTTTGTGCAGGTG
3' ss Score
10.45
Exon sequences
Seq C1 exon
GCGGGCTCCGGCTGCCATGGAGGAGGAAGAGGAGGCGATAGGCTTGCTGGACAAGGTTCTGGAGGACGAAGATGTGTTTCTCCTGGAGGAGTGCGAGCTGGGAACCCCGACCAGCCCCGGCTCAGGGTCCCCCTTCCTGGTGGCTGTGAAG
Seq A exon
GTGGGAGCGTGACACGCCCTGGGCGCTGGGGGGGGCCGGGCCGGCGCTGCCGAAGGTGCGCGGGAGAAATGGCTGATGCGGGCGCAGAGCGCGCGGCCGGGTGGAAGCCCTCGGCGGAGGGTCCCGGCCCCGGCAGCTGTTCCCGGGGGAGAGGGGCGGGCCTGCCTCCCCGACCGGTGTCCTCGGGGCAGTGGTGGCCGCCCCCTCCAGGCCAGCCCAGCTCAGGGCTCCGGCGGCTGTGCCAGGAGTCACCTGGCGCGCCTGTCAGCCCGAGCCTCGCCGCCTCCCTGGAGCGGGTGGGCAGGAATCCCCCGTTTCCACGGCAACCGCAAGAGAGGGGCCACCCTCTTCCCAGCCAGGAGACAGGGACTTGGTGTCTCCGAGCTGAGGCAAGAGGGTGTTTGCAAAGGGCAAGAGCCAGAGGTCACTGAGCTTCCTTGAAGGAAAAGCACTGGGTCAGCTGAAGGGGGGAGGGAACAGCTGGCTTGGAGGCTGCAGCCAGGTGGGCAGGTGCCCTTCCCGAGGCGGGACAGGCAGGGAGCATCTGCTGGGCCCTGGCCCACCCGCTCTGGGGCTGACGGCGTTCTCTGCAGCAGTGACCCGTCCTGTAGGAGAGGTTGGCTCCCGGTGGAACTGGAGGGCAGTGGTGGCCAGAATCCCTTGAGGAGCGGGGCGGCCCCGGAACCACGCCGGCTCTGTGAGTCTGGCCCGGCACACCACAGCGGTCTTCCTTTTTCTCTCCTGGACACACCTCTCAGAGCTTCCACCTCAGCCTTTTGCTCAGCTGCTCTCTGGTTCTGTGTCGAGAAGGGAGGCCCAGTGAGGATGCGTTTCGGGGAGTTTGCAGACTGCTAGGCGAGGCTGCCTAACCGAGTGCCCATCGGCGGGGCCTAGAAGGCATGTGCAGCCAGCATTGCTGGGGACGGGAGGCTGTCCCTGAACCTCTCTGGGCCTCCCTGCCCCTCACAGAAGATGGGGATCACAGTCCTGCCCCACCCACTCTACAGTGTGGCTCTGAGGAGGAGCCAATGGAGGTAAAAATAGATGCAGAACCACGGGAGATGGCTGATGTGTGAGTATGGGTGGAGCGGTGGCTGCAGGCCTGGGTGGGGAGTGGAGCTGTAGGGAGGCTGGCAGTGGCTGGCACCCCACCCTGTCTTCTCTGATCTGGTGCTGGCGTAGGGCCGTGGGGGTAAGTCACGTCTCCCCGTGGGCTCAGGGAGGCCTCTGCACTTAGGGTCTGACCAGCCTCCCCACTAGGAACAGGGTGGGAAAGTCTGCTCCTGAGCCAGGAGTCAGGCTGGGAGTAGCAATGCTGGGATGGGAGGTGTGTGGCCCTCATGGGCCTCCTCTGGGAAGCCCCCAGCACAGATGTGGGCCCACTCAGAGGCTGCCTCCTGGACCTCCCCTTCTGCTGGACCCCGGCGTATGCCTCAGCTAAGCCCGTATTTCATTCTGCTCAGATGCTCAGAACTCTAGACATTTGCCTCCGCAATTATATCCCATTCTCCTGGAGGACCAGGACCATGTCATATTCATTGCTGAACACTGCACAGTGCTTGGTGTGGGGCTGGTGCCTGTGAGAGTCTGCACAATGTGTGAGGCCCGCTGGGGCCCACGAAGGGTGCACCAGGTTCCCAGCCTCGCTCCATCTCAGAGGTGTCCTGCTGTGTACGGCGGTGGCCCACGGATGCCAAGAGAGCCTGAGCACGTGTCACACCTGAAAACGCTGCTCCTCCTGGGTCCCCGTGAGCACCGGGATGGTGTCTTCCCCTCTACTTTGCTGCCAGCATGGGGGAAGGAGACCTTTCTCGAATGCCGGGGAGTTCCAGGCTCCCTGCTCCATCCTGAACACCTCTAGAATTCCTCCCTCCTCTACCGGCATTGGCCTCAGAGGGAGAAGACAAGCAGGTGGCCACAGAGCGGTGGGAAGAAAGCTCCTGGATTCATTCAACAAACACTCTCAGGTTAGGTGCTCTTCAGAGCACCCTGCCTGGCACTGTAGAGATGACAAGAGGAACAAGGCGTGATCTTCCCTCACAAGGCGTTCAGAGCAAGGGGCAGGTACAGGGAGTAGGAATAGAGTACGGAAGTAGGCAGGGTGGGCCAGATGCGGTGGCACACGCCTGTATTCCCAGCACTTTGGGAGGCTGAGGTGGGCGGATCACCTGAGGTCAGGAGTTCGAGATCAGCCTGACCAATATAGTGAAACCACATCTCTACTAAAAATACAAAAATTAGCCGGGCGTAGTGGTGGGCGTCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGGAGGCAGAGGTTGCAGCGAGCCAAGATCATGCCACTGCATTCCAGCCTGGGCGACAGGGTGAGACTCAGTCTCAAAAAAAAAAAAAAAAAAAAGACTGTGAGAAGAGTACTGATAAAAGGGCACCAAATTCAGGGGAGAAGGGACCACTTCTAGTGGAGTTGGGGATGGCCTGGATGCGTGCATGTGTGTGTGTGTGCAGGCCAAGGGTCATTTCTGGATGATACACTCCTGTCCTGGGCTGCAGAGGTTCTTGGCACACCCTTCCCTGGCAGCTAGTAGGAATCCAAGGCAATTCTCTTTGCTATTACTTTACTTTAGGGGTACTTACCTTAAGCAGCAGTTGCGTTGTGAGCATGTGCCCAAGTGCCAGGCCCATAAATCAATCCTGTTTCCAGTGTCATTTCCAAGACGCTTCATCTTCCTGGGGGGCAGAGGTAAAGTTGGCTGCAGTTTTCTCCAAAGCTATAGCTGGAGTTTGCTGCATATCTCAGCCCAGACTTACCTTTGAAGAGTTATTGATCTGTAAAACTGGTAATGCAAATAAAATACTGATAGCAGCGTCATGTTGCATTTGTAAAATGGCTTACACTTGCCAAAAATGTTTCATGCCATTCTATTTAAAGATAGGTAGGGTTGTGACGGGGGCGTTGTAGAAGGTGCTATTTTAAGGAACTTATTTGTCAGGAATAAAAACCCTTTTGTAATGCAGATTAACCCTTTAGGTATCATTCTGTGCCATTTTTTTTTTTCTTTTGAGACAGAGTCTCACTCTGTCACCCAGGCTGGAGTGCGATGGCACAATCATGGCTCTCTGTGGCCTCCACCTCCCAGACTCAATCAGTCCTCCCACCTCAGCCTCCCCCTCACTACAGGCACATGCCACCACGTTGGGCTAATTTTTATATTTTTGTAGAGACAGGGTTTCACCATGTTGCCCATGCTAGTCTGTAACTCCTGGGCTCAAGCAATCTGCCCCTCTTGGCCTCCCAAAGTGCTGGGATTACAGGAGTGAGCCACTGAGCCCAGCCCAATTCTGTGCCAGTTTTTAATGGATCATCTGAAACATCTCTATTTCTGTTTCACCTGCCCAGGTCTCTTGTGCCTGCACATCATGCCTGTATCCCCCATTTGGATGTTTTTCTAAGTGCGGGCCCCACGTGGTGATTTGAGAAATGATCGGTGGCACCTCGATCTATATTTTGCATTTTAATGGTTAAGTATATATTTTAATATATATTAGAAAAAATATGACCTGTACATTTTTCTTACGATTTCAAATACGTGTAGGGTAAGACTGCTTTTTACAAGTCAGTTCTTGGGCGCAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGACTGGGCGCGGTGGATCATGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAACACAAAAAGTATCTGGGCGTGGTGGCGTGCACCTGTAATCCCAACTACTCAGGAGGCTGAAGCAGGAGAATCACTTGAACCCGGGAGATGGAGGTTGCAGTGAGCCAAGATCCTGCCACTGCACTCCAGCCTGGGTGACACAGTGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAGTTACTGTAAAGAACAATATTGAGTAAAGAATAGTGCAGGTGGTGGTATGTGAGTATGGCAAAATTTTAAGGGTGGGATATGAACAACCAAAGTTTCAAAACATTGCCTGTGCCCTATGGTGCCTGCCTAAGACCTCAGACAGCAATAGGGAGCCCAGAATACGGGGATCCACCCTTCAGGAGAGAGGGGCCACTGGAATTTGGTCTTTGTCCCCCAGCAGTTGACCCGTCTTCTCTGTTCTAAATTCTGCCAAGGAAGCAGCTGAAAGAGACTTCCTCAGCGCCTAGCGCTGGGAGAGGAGAGGGTCTCTCGATGCCTCTACACTGCCTCAGCTGTCCTGAGACTGAGATGGGCCAGTTGTCCTGAGGTTGATGCTTGGTGTGGGTATAAGCCCCAGGCACGGCCACCCCCACCCCCAGGCCCAGTGGCATCTACTCTGAGCAGATCCTGCTGGGTACTCCTGGCAGCCAGCTGTGGCCCGTGAACTGACTTCTACCGTCTGTGAAGCCTCAGACCCTCGCTGCATGCCCTATAGCCTTGAGTCGCAGCCAGAGAGCCAGCCCTGCTTGTTGTCTTGGAGGCCAGTGCTACTGGAGAGATTGTGTCTTTGCTTGGCCTGGAACCAGATGTTTGGAGGCTTTATTTAGCCTCTCAACTCTGTGGAGGACCAGGCCTGAGCTGGCCACGCCTTATCTCTAGACATTGTTCCTACCAGAGTGACCTGACGTCTTTGGTTTGGCGGCTTCAAGCTGCCACACTGTCAGCCTAGCAGATTGTGCAGGATGCTGAGGATAAACGAACCCACCAGGACTGCATTTCACAAGTTCTGGCTGGGAGGAAGTGAGGACAGGCAGCTTCCCGGTGCTGGAGACAGGTAGGCAGCGTGGCAGAGGCTGTGGGACCTGGAACTCTTTAGAGAACTCGCTCCGGAGCATTCTAGGCACGTGGGCACCTCTCCTTCACCTTCGTATTCCCAGTGCCTGGCTCCCGGTGGGAATGGGTGAGTGAGTGGTGAGCCTGGTTTTTGATGAGACAAGAGACGCCCTGCAAAGACTGAAGAAACAATGTGAATTTCCTCATGGCTCTAAACTGGGAATTGTGGAGTCTGAGGAAAGCTGGAAAAGATGGGAGATGGAACAGGCCTTCCTTTGGTGGTGACTGAGCAACGGGTCTCCTGTTAGCCAAGTGCACCGAGGCTAATTTCCCATCCGTACGCTCTCCAACGCCTTTGCTCCAATCTCAGCCAAAACTGCAGCGTGAACGGGGCCCAGAGCAGGACTCTTGGGGCTGACTGTTGCCTCTTGAGGGAGGGTCTTCCTGAGTTGTCTTCCCATCAGAACCAGCCTTTCAAGAGTGGACTATGAATGGAAGTCTTGAGGGGAGGATCTTGCAGAAATGGGCGATTACAGGGCTTCCAGGGTCTATGCTCGTGCCAGGGGGGATGAAGCTTGTTTGTGGCTGGGGCTGCAAATCCCTTTCTTCCCCCCATCCTAGTCCAACCAGCTCTACAGTTACAGCTCACGGTGTGGCATTTGCTAAACCCTCAGGCAAAACCTTGGTTGGCAGGGAACAGGAGGGAGTGCTAGCCCCCAGCACAGGGGATGAGTTCCCATTTGTCAAGGCTGGGAAGCAGCAGGAAGACCCCTGAGGGTCTGACCTGGAGGGGCTGGAGCTGGGGGCTGTTCCAGGCTCTGATCTTGTCCCCCGGGGCTACGTGTGCTGGAGGCTGTGCAGGCCTCTGGCAGTCCCGACTCTCGGTGCCTCAGGAAGATGATAACACCTGCCAGGTTTTGAGACTCCGGTGAATTGAACCACAAAGATAGCTAAGCTCAGTTCCTGGAATTTGTGAAGCCGCCAATAAGTAACTATTGCCCTTGCCTGAAGCGTGGGGTCTGTCTTGCTTTTCTAATGCTGCTGAAACAAATCGCCACAAACTTAAGGGCTTAAAACCACACAAATTTATTCTCTTATACAGAAATCTAAAAAGGATCTCGGCCCGGCTCCATGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGCATCACCTGAGGTCAGGAGTTTGAGACGAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGTGGGTGTGATGGTGGACGCCTGTAATCCCAGGTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCTGAGATCATGCCATTGCACTCCAGCCCTGGGCGACAGAGGGAGACTTTGTCTCAATAAGTAAATACATAAATAAATAGATTAATTAAAATAAAAAGGATCTCCAGGGCTGCATTGCTTCTGGAAGCTCTAGGGCAAGCTTTTCCAGCCTGCGGCCATACGGCCCAGGACTGCTTTGAATGTGGCCCGACACAAATTTGTAAACTCTTAAAACATTATATATTTTTCTTTTAGTTCATCTGCTGTCGTTAGTGTTATTGTATTTTATGTGTGGCCCAAGACAGTCGTCTTCTTCCAGTGTGGCTCAGGGGAGCCAAAAGATCGGAAGCCCCTGCTCTAGGGGAGTGAGTTCATTTTATTGCCATTTCCAGCTTCCAAAGGCTCTCTGCATTCCTTAGCTCGTGGCCCCATCCTCTGTCTTCAAACCTACCAGTGTAGCATCTTCCAAGCAGTCCCTCACCACTACCCTGTCTCCCCGGCCCTCTCACTCCCCTTCTGTGGCCACGATGCCTCAGGGAAAGATGGCATTTTAGGCAGCAGGTAAAGAACGAACCGAAAGCTAGAGACCTTTGAAGATGAGGAGGCTGGTTCTCCTGCGTGTGGGGGAGACTGAGCGATGTCCTGGCTGTGGGAAAGACTGGAAGGGTAGGGACGGGCATCCGGGCCACTGCAGGTGGCTCATAAAGGATATGGTGGGCCCCATGTCCCAGTCTAGGGCCGAATCTTTACTTGTTTTTTAAATGTCTTTCCGGCAGGGTGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAATCCCGGCTCTACTAAAAATACAAAAAGTTAGCTGGGCGTGGTGGCGGGAGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCTAGCCTGGGCGACAGAGCGAGACTCCGTCTCTAAAAAAAAAAAAAAAAGAAAAAATAAATGTCTTTCCCACTAGAGTCTAAGCCACTTGAGAACAGGGGCCACTGTCTGTTTCCCATGGTATCTATAGGGCCTGGTGGACATTCAGTAAATATTTATTGAATGAATAAATAAATGGACACATAGCCCAGTGGAATCCCCAAGTACTCGCGTTTTGCGGTATTCATACTCGGTCCTTGGCAAGCATCGGGCAAGGTGGCACTCTTAGGAGTTGAATCCAGCTCTGGTGTGTGGGACAGGCAGGAGGAGAGGAAGAGAGGGAGGAAAAGTCGGTTCGAGAACCCAGGTGGAAAATAGATTGAGGGAAGCAAAACGAGATGTTACAGGAGGAATATGGGTGATTGTCTTTTCCTTTTATATTTCTGCATGTTTTGTATATTTTTTATAATAATATCTGACTTTTATCCCCTATGAAAGTGTCGCTTAAAATAAAAGGAAAGGGGAAAGGGGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGACGGATCACCTGAGGTCAGGAGTTCTATACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAAAAATTAGTCTGGCATAATGGCTGGGCATGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGTGGATCACCTGAGGTCAGGAGTTCTATATCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTATCTGGGCATGGTGGCAGGTGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGGGAATCACTGGAACCCGGGAGGCGGAGGTTGCAGTGAGCCGAGATTGTGCCACTTTACTTCAGCCTAGGTGACAGAGCGAGACTTCGTCTCAAAAAAAAAATAAAGGTCGGGGGGGAAGGGCAGGGAAGCAGACCGTCCACGCAGGGTTTTGGCCTCCTTGCTCATGAGCTGTTGGCTGTGCTTTGCGTTTGTGCAG
Seq C2 exon
GTGGAAGCAGGGAAAGGCCTGGAGATGAGGAAGCTGGTTCTCTCGGGGTTCTTGGCCAGCGAAGAGATCTACATTAACCAGCTGGAAGCCCTGTTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159842-ABR:NM_001092:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.056
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0062115=RhoGEF=PU(12.2=80.0),PF104224=LRS4=PU(4.9=28.0)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)