HsaINT0003034 @ hg19
Intron Retention
Gene
ENSG00000183549 | ACSM5
Description
acyl-CoA synthetase medium-chain family member 5 [Source:HGNC Symbol;Acc:26060]
Coordinates
chr16:20435238-20439189:+
Coord C1 exon
chr16:20435238-20435391
Coord A exon
chr16:20435392-20439109
Coord C2 exon
chr16:20439110-20439189
Length
3718 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGA
5' ss Score
5.55
3' ss Seq
CACCCTTTGTTTTTGTTTAGACT
3' ss Score
8.03
Exon sequences
Seq C1 exon
ACGGTGGGTGGCCTTGACCGAATCTGACATCTTCTGGAACACGACTGACACTGGCTGGGTGAAGGCAGCCTGGACTCTCTTCTCTGCCTGGCCTAATGGATCTTGCATTTTTGTGCATGAGCTGCCCCGAGTTGATGCCAAAGTTATCCTGAAT
Seq A exon
GTAAGAGGAAAAACCAACAATACCCCATATGTGTTGGGTACAAATGAGATGAGTGGGATATAGATTTCAGACTGCAGGAGAAAACACATAAATCAGTGAATTTAAGGCTTCTTTGGTGTGGCTCCCTGGCCTTCCATAATCTGGTTCCTGACCACCTGGTTCCCTTCAATCATTGCCTATGCTCTAGCTACATTCCTAGATGTAAGACCATTTTGTTGCTATTTCTTTTGCATGGGGTGCCCTTGTTTCCACCACTTTCTTCCCTATGCTCCTGCCAAAACCCTAGGTATTTGTCAAACCCTTAGGCAAAATCAGTCTATGCCTCAACTCCAAATGCTACTGTCCATGGTTCTTAACATGAGTAGTTGGCCCAACTAGAGAGTCCTGGTGACTCCTGCTCAGCCTCTCAGGGTCTTCTCATGGGGAGGGAGGAGATTGGTGGCCCCAGTCAAGACACAGGTCACCTTTCTTCCACCCCCCACATCCTGTCATTCCTTAAAATGTCAGAGGACACTTCTGCTCATATTATTTGTACTGAGATAAGCTGTATCACATGGTAGCTAACTGCATAGGCTGTGCCATCAGTCAAAGAGTCAGACCTGGACTCTGATCCTACACCTTTGATTCGCTAGCTGTGTGGCCTTGGGGAAGCTGCTTAATCTCCTGAGCTGCAGTTTCAGCCTCATCTGTAAGAAAGGGATACATTTCTCTATAGATTTGCTGCGAGAATGAAATGATACAAGGCAAAGGGGCCAGCACATCATAGGTTCTTTTTTGAAATAATTTTTAATTTTTGTGGATACATAGTAGGTGTATATATTTATGGGGTACATGAGATGTTTTGATGTAGGCATGCAATGCGTGAAAATCACATCATAGAGAATGGGGTATCCATACCCTCAAAGCATTTATCTTTTGTGTTACAATCTAATTATACTCTTTCAGTTATTTTAAAATGTACAATTAAGTTTTTATTGACTATAGTCACCCTGATGTGCTTTAAAATAACAGGTCTTATTCATTCATTCTATTATTTTGGTACCAACTAACCATCCCCACCTTTCTCCCAGCCCCCGACTACCCTTCCCAGCCTCTGGTAATCATCCTTCTAATCTCTATTTCCATGAGTTCAATTGTTTTGACTTTTAAATCTCACAAATAAGTGAGAATATGTGAAGTTAGTCTTTATGTGCCTGGCTTATTTCACTTAACATAATGATCTCCAGTTCCATCCATGTTGCAGCAAATGACAGGACCTCATTCTTTTTTATGGATCCATTGTGTATATGTACATCTTCTTTTTCCATTCATCTGTTGATGGACACTTAGGTTGCTTCAAAACATAGTAGATTCTTTTTTTAAAAAAAAATTATTTTCATAGGTTATTGGGGAACAGGTGGTGTTTGATTACATGAGTAAGTTCTTTAGTGGTGATTGTAAGATTTTGGTGCACCCATCACCTGAGCAGTATACACTGCACCCAATTTGTAGTCTTTTATCCCTCACCCCCTTCCCACCATTTTCCCCAAGTCCCCAAAGTCCATTGTGCCATTCTTACACCTTTGCATCCTCATAGCTTAGCTCCCACTTATGAGGGAGAACATAAAATATTTGGTTTTCCATTTCTGAGTTACTTTACTTAGAATAATAGTCTACAATCTCATCCAGGTCCCTGCGAATGCCATTAATTCATTCCTTTTTATGGCTGAGTTGTATTCCATTATATATATTTATATACCACACTTTCTTTGCCCACCTGTTGATTTATGGGCATTTGGGTTTGTTCCACATTTTTGCAATTGCAAACTGTGCTGCTATAAACATGTATGTGCAAGTATCTTTTTCATATGACTTCTTTTCTTCTGGATAGATGCCCAGAAGTGGGATTGCTGGATCAAATGGTAGTTCTACTTTTAGTTCTTTAAGGAATCTCCACACTGTTTTCCACAGTGGTTGTACTAGTTTACATTCCTACCAGCAATGTAGAAGTGTTCCTTGTTCACTGCATCCATGCCAACATCTATTATTTTTTGATATTTTGATTATGGCCATTCTTGCAGGAGTAAGCTGGTATCACATGGTGGACCAAATATAGTAGATTCTTAACCCATATTGATTGTTATCATCATGATCAAACTCATCACCATCATTATCCATGTAGTGCTTGATCAGCCAATGTATGGACCTTCTCCTTGCACTGTCCCCAGCTCTGATATAGTGTTTTCATTATCTATTGCTATGTAATAAATTATACCGAAACTTAGCACTTTAAAACACAAGCATTTATCTCACAGTTTCTGATGGTCAGGAAGCTGGAGGTAGCTTAATGAGGGGTTTTTGGAGCAGGGTCTCTCATGAGGTTGCAATCAAGAGGTCAGCAAGGTATGCTCATGTTCATAGCAGCATTAACAATAACTAAAAGGTGAAAGCAACACAAGTGTCCATCCACAGATGAATGAATAAACAAAATGTGGTGTATATGTACAATGGAATATTACCCAGCCTTAAAAAGGAAGGACATCTTGTTGTATGATATAACGTGGATAACCCTTGAGGACATTATGCTAAGTGAAACATGCCAGTCATACAAGGACAAATACTGTATGATTCCACTTACATGAGATTCCAAGAGTAGTCAAATTCATAGAGACAGAAAGTACAATGGTGTTTACCAGGAGTTAGGGGAGAGATTAATGGGAAATTATTGTGTAATGGGTACAGAGTTTAAGTTTGAGAAGATAAAAATAGTTCTGGAGGTGGATGGTAGCGATGGTTGCACAACACTCTGGAAATGTTTAATCCCACTGGACTATACACTTAAAAACCGTTCCAATGGGCAAATCCTATGTTGTGTGTATTTTGCCACAATAATTTTAAAGAAGATATTTGCTAGGACTGCAATCATCTTAAGGATTGACTGAAGCTGGAAAATTGCTTAAAAGTTCACTGGTGGCCGGGCACAGTGGTTCATACCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGTGAATCATGAGGTCAGGAGTTAAAGACCAGCCTGGCCAGGATGGTGAAACCCCGTTTCTACTAAAAATACAAAAATTAGCCGGGCCTGGTGGTGGGCACCTGTAATCCCAGCTACTCAGGGGTCTGAGGCAGAGAATTGCTTGAACCCGGGAGGCAGAGGTTGCAGTGAGCTGAGATCTTGCCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCCATCTCAAAAAACCAAACAAAAAACAAAACAAAAACCTCACTGGTGGTTTTTAGTAGACTTCAATTTCTCACTGGGTGTTTGCTAGTCTCCAGTTTCTCACTGTGTGCACCTGTCCGTAGGATGGCTTGAGCATACTCAAAACATGGTGGCTTGCTTCCCCCAGAACAAGGGATCCAAGAAAGGCAGAGAGAAAGAATATCCAAGACAGAAGCCATAGTCTTTGTATAACCGAATCTTGAAAGTGGTATTCATCACCTTGGCAGTATGCCATTGCTGTCACAGACCCACTTTGGTATGAGGTGAGAGGGGATCCTCCAAAGGTGCACATGCCAGGAAGTAGGAGTCACTGGACACCATCTTGGCTGCTGGATTCCACACATAGTTTTCAGCTTCTCTGCTTTGGTACTGAGACTATAAAGATGCATTTGGCTCCATCTTCATGGTCCCACCCCAATGATTCTAAGGACATCTTTCACCCTTTGTTTTTGTTTAG
Seq C2 exon
ACTCTCTCCAAATTCCCGATAACCACCCTCTGCTGTGTCCCAACCATCTTTCGGCTGCTTGTGCAGGAGGATCTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183549-ACSM5:NM_017888:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(12.3=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(6.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)