RnoINT0012483 @ rn6
Intron Retention
Gene
ENSRNOG00000031211 | Acsm5
Description
acyl-CoA synthetase medium-chain family member 5 [Source:RGD Symbol;Acc:1309578]
Coordinates
chr1:189252097-189254104:+
Coord C1 exon
chr1:189252097-189252250
Coord A exon
chr1:189252251-189254024
Coord C2 exon
chr1:189254025-189254104
Length
1774 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGA
5' ss Score
5.55
3' ss Seq
CTACTTCTTGTTTTGTTTAGACT
3' ss Score
7.18
Exon sequences
Seq C1 exon
GAGGTTGATGGCCTTGACTGAATCCGACATATTCTGGAACACAACTGACACTGGTTGGGTGAAAGCAGCCTGGACTCTCTTCTCTGCCTGGGCCAATGGCGCTTGCGTTTTTGTGCATGAGCTGCCCCAAGTTGATGCCCAAACTATTCTAAAT
Seq A exon
GTAAGAAGAAAAATCTAGTGCTGGGTTTCTGAACTTTGCACACATTGGGCAAATGTCCTATCATTGTGCAACTTCTCCAGGCCTTGTTTTGAAACAGAGTCATACTATGTAACCCAGGATAACCTTGAACCAGAGGTCTTCTGCGTTGGAGTGCCAAGAGTGGAGGTTATGAGTGTATGCCACAGTGCCAAGCTCTGAATCACCTCTTGTGTCCTGAGTGTAAATGGGATGAATGGAATCAATGTTTCAGGTAGCATGAGAAAATGTAGGAATCGAATGACAAATTCACTTAGAACTTTTATAATCTGGGTTCAGTCTATTTAGCAACCTCCAATCATTACCCGCCCTCAAAATAGATCCCTAGACATGAAAGTATTTCACCTCTCCAAACGTTATCAAAGCCTTTTACTGCATGCTGCACCATTCTTTCCTTTACCTTCTTCCCTATGCTTTTGTCAAAACACAAACTATTTGTCAAAACTTTAAGTAAAATCCAAAGTCTAGCCCTCAGAGCATGTGCAACTGTCCTTGTACCTTATTACGAGTCATTTAGCGAACTCAAGTCATTCACCCAGTGCCTCCTGTCTTATTTTTCTGGGCTCTTATCATGAAGGAAGAGGATTGACATCCCAAGTGAAGACACAGAATACTTTTGCTCTCTCCTCTAAATGGCATTTTGTGAGATATCAATGAGCCTATCTCCCCATACCCATCTCTTTGAGACAAGCTGGGTCAAATGTGGCAAGGAGTATAGGCTTCTCCATTGGTCAAATTCGGATTCTCAGCCTAGTCTCCTGACTTCTTTGAGTCTCACTCTCTAAGCTGTCATGAGAACAAAGATACTGTTTTCCTAATACACTAGTTGTTATTCATTTCCCATCATCATTGTTCTTGGAGGATGTGTCAGCCATCTGTGCAGCTTTTCTCTTCACCATCCCTAGCCATGGCAATATATTCAAGATCTATTATTTTGCAGTTTCCCATGTACACCCATACTAACAGCAGCATTGTAGCGATTCATAGTAATTCAAGGTAAAAGGCAGGAGCAGCCCAAGCACTCATCAGAAACTGATTGTGTAAACCAAATAATAGTGCCCACCTTGTTTTTGGCCTGGAGTTTGTCTTTTGGGCTAGACTGCTGGCCAGCGAGTCTCAGGGATCTACCCATCTCTGCATACACTACCACACCTGACTTATTTTCTCATGGGTTGGGTTCTAGGACCAAACTTGGGCTCTTAGACTTGTGCTGGTTTTGGCATCTCCTACAATAATTTTTACAAAGATAGCTTCTAGGAATGCAGTCATTTCAGAGCATGGTTAATCCTGGGTAATCTGTTTAAATTCTGGATTGTTGTTTTTATTGATTGTCCACTAAAAACTGGCCAGAGGTATCATTTCCTCACTGTCTGCCGAGGACAGCTAGAATGTAATCACAACCTAGTACCTTGTCTTCTCCAGAGTGAGTCACTCAAGAGAGGGAGAGAGGTAAGAACATTTGAGACAGAAGCTGTATTCTTTCTGTAATCTAATCTCAAGTGACACACACCATGTCAACAGGATGTTATTGGTCCCATGGACCAACCATGGAGCAGAGTAAGAGGAGACCCCATAAAGGTACAAATGCTAGAAGGTGGATCATGGACGTCACCTTGACAGATAGATGCCATGTGTAGTGTTCTACTCTGCTTTGTCAGTGACACATTGAGATCCATTTCACCCATCCCATTTCACCTGAGTGTCTCTGAGAAAACTGTCTACTTCTTGTTTTGTTTAG
Seq C2 exon
ACTCTCTGCAGGTTCCCAATAACCACCATTTGCTGTGTCCCAACCCTCTTCCGGCTGCTTGTACAAGAGGATCTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031211:ENSRNOT00000046025:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(12.3=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(6.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTTGATGGCCTTGACTGA
R:
TCAGATCCTCTTGTACAAGCAGC
Band lengths:
230-2004
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]