RnoEX0006246 @ rn6
Exon Skipping
Gene
ENSRNOG00000031211 | Acsm5
Description
acyl-CoA synthetase medium-chain family member 5 [Source:RGD Symbol;Acc:1309578]
Coordinates
chr1:189251577-189254104:+
Coord C1 exon
chr1:189251577-189251720
Coord A exon
chr1:189252097-189252250
Coord C2 exon
chr1:189254025-189254104
Length
154 bp
Sequences
Splice sites
3' ss Seq
CTTCCTCTCATTTTTGGCAGGAG
3' ss Score
8.59
5' ss Seq
AATGTAAGA
5' ss Score
5.55
Exon sequences
Seq C1 exon
AGTGGCATCTCCAGAACACAACTGCCTGAGAACCAGAAGTGGAGATTCAATGGCCATCTACTTCACCAGTGGAACCACGGGGACCCCCAAGATGGTGGAACATTCCCAGTGCAGCTATGGACTGGGTTTTGTGGCCAGTGGAAG
Seq A exon
GAGGTTGATGGCCTTGACTGAATCCGACATATTCTGGAACACAACTGACACTGGTTGGGTGAAAGCAGCCTGGACTCTCTTCTCTGCCTGGGCCAATGGCGCTTGCGTTTTTGTGCATGAGCTGCCCCAAGTTGATGCCCAAACTATTCTAAAT
Seq C2 exon
ACTCTCTGCAGGTTCCCAATAACCACCATTTGCTGTGTCCCAACCCTCTTCCGGCTGCTTGTACAAGAGGATCTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031211_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(11.6=100)
A:
PF0050123=AMP-binding=FE(12.3=100)
C2:
PF0050123=AMP-binding=FE(6.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCATCTCCAGAACACAACTG
R:
TCAGATCCTCTTGTACAAGCAGC
Band lengths:
218-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]