MmuEX6013569 @ mm10
Exon Skipping
Gene
ENSMUSG00000030972 | Acsm5
Description
acyl-CoA synthetase medium-chain family member 5 [Source:MGI Symbol;Acc:MGI:2444086]
Coordinates
chr7:119534234-119535818:+
Coord C1 exon
chr7:119534234-119534377
Coord A exon
chr7:119534762-119534915
Coord C2 exon
chr7:119535739-119535818
Length
154 bp
Sequences
Splice sites
3' ss Seq
CTTCCTCTCATTTTTGGCAGGAG
3' ss Score
8.59
5' ss Seq
AATGTAAGA
5' ss Score
5.55
Exon sequences
Seq C1 exon
AGCGGCTTCTCCAGAGCACAACTGTGTGAGAACCAGAAGTGGAGATTCAGTGGCCATCTACTTCACCAGTGGAACCACAGGGGCCCCCAAGATGGTGGAACATTCCCAGTCCAGCTATGGATTGGGTTTTGTGGCCAGTGGAAG
Seq A exon
GAGGTGGATGGCCTTGACTGAGTCTGACATATTCTGGAACACAACTGACACTGGATGGGTGAAAGCAGCCTGGACCCTCTTCTCTGCCTGGTCCAATGGAGCTTGCATTTTTGTGCATGAGCTGCCCCGAGTTGATGCCAAAACTATTCTAAAT
Seq C2 exon
ACTCTCTGCAGGTTCCCAATAACCACCCTGTGCTGTGTCCCAACCCTCTTCCGGCTGCTTGTACAAGAGGATCTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030972_MULTIEX1-4/5=3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.005 A=0.034 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(11.6=100)
A:
PF0050123=AMP-binding=FE(12.3=100)
C2:
PF0050123=AMP-binding=FE(6.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTCTCCAGAGCACAACTG
R:
GTCAGATCCTCTTGTACAAGCAGC
Band lengths:
218-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types