GgaEX0027426 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr14:15239925-15242396:-
Coord C1 exon
chr14:15242253-15242396
Coord A exon
chr14:15241048-15241204
Coord C2 exon
chr14:15239925-15240004
Length
157 bp
Sequences
Splice sites
3' ss Seq
TTTCCCCTCTGCTTTATCAGGCA
3' ss Score
9.57
5' ss Seq
GAAGTAAGC
5' ss Score
6.95
Exon sequences
Seq C1 exon
GGTGACATCTGCTGACCACAAATGCGTTAAGACAAGAAATGATGACCCAATGCTCATCTATTTTACTAGTGGAAGTACAGGCTCTCCAAAAATGGTGGTGCAGTCCCACAGCAGTTACGGCATCGGATTTGCAACCAGTAGCAG
Seq A exon
GCACTGGATGAACTTGACTCCCTCAGATATAATGTGGAATACCTCTGATACTGGCTGGGTAAAGGCAGCTTGGAGCAGCGTATTTGCACCATGGATCAGTGGATCTTGTGTTTTTGTTCACAACATGCCACAGTTTAAACCAACAGTCATTGCAGAA
Seq C2 exon
ACTCTCTCAAGATACCCTATCACCGTCTTCTGCACTGCTCCCACTGCCTACCGCATGCTTGTCCAACATGATGTGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001961_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(11.6=100)
A:
PF0050123=AMP-binding=FE(12.5=100)
C2:
PF0050123=AMP-binding=FE(6.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGACATCTGCTGACCACAA
R:
GCTCACATCATGTTGGACAAGC
Band lengths:
222-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]