HsaEX6042597 @ hg38
Exon Skipping
Gene
ENSG00000183549 | ACSM5
Description
acyl-CoA synthetase medium-chain family member 5 [Source:HGNC Symbol;Acc:HGNC:26060]
Coordinates
chr16:20421258-20427867:+
Coord C1 exon
chr16:20421258-20421401
Coord A exon
chr16:20423916-20424069
Coord C2 exon
chr16:20427788-20427867
Length
154 bp
Sequences
Splice sites
3' ss Seq
CGTTCTCTAATTTTTGGCAGACG
3' ss Score
6.7
5' ss Seq
AATGTAAGA
5' ss Score
5.55
Exon sequences
Seq C1 exon
GGAGGCTTCTACAGAGCACAACTGCATGAGGACAAAGAGTCGAGACCCGCTGGCCATCTACTTTACCAGCGGAACCACCGGGGCCCCCAAGATGGTCGAGCACTCCCAGAGCAGCTACGGACTGGGTTTTGTGGCCAGCGGAAG
Seq A exon
ACGGTGGGTGGCCTTGACCGAATCTGACATCTTCTGGAACACGACTGACACTGGCTGGGTGAAGGCAGCCTGGACTCTCTTCTCTGCCTGGCCTAATGGATCTTGCATTTTTGTGCATGAGCTGCCCCGAGTTGATGCCAAAGTTATCCTGAAT
Seq C2 exon
ACTCTCTCCAAATTCCCGATAACCACCCTCTGCTGTGTCCCAACCATCTTTCGGCTGCTTGTGCAGGAGGATCTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183549_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(11.6=100)
A:
PF0050123=AMP-binding=FE(12.3=100)
C2:
PF0050123=AMP-binding=FE(6.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGCTTCTACAGAGCACAAC
R:
GTCAGATCCTCCTGCACAAGC
Band lengths:
221-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains