GgaEX0027426 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr14:14484995-14487466:-
Coord C1 exon
chr14:14487323-14487466
Coord A exon
chr14:14486118-14486274
Coord C2 exon
chr14:14484995-14485074
Length
157 bp
Sequences
Splice sites
3' ss Seq
TTTCCCCTCTGCTTTATCAGGCA
3' ss Score
9.57
5' ss Seq
GAAGTAAGC
5' ss Score
6.95
Exon sequences
Seq C1 exon
GGTGACATCTGCTGACCACAAATGCGTTAAGACAAGAAATGATGACCCAATGCTCATCTATTTTACTAGTGGAAGTACAGGCTCTCCAAAAATGGTGGTGCAGTCCCACAGCAGTTACGGCATCGGATTTGCAACCAGTAGCAG
Seq A exon
GCACTGGATGAACTTGACTCCCTCAGATATAATGTGGAATACCTCTGATACTGGCTGGGTAAAGGCAGCTTGGAGCAGCGTATTTGCACCATGGATCAGTGGATCTTGTGTTTTTGTTCACAACATGCCACAGTTTAAACCAACAGTCATTGCAGAA
Seq C2 exon
ACTCTCTCAAGATACCCTATCACCGTCTTCTGCACTGCTCCCACTGCCTACCGCATGCTTGTCCAACATGATGTGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000018875_MULTIEX1-3/24=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGACATCTGCTGACCACAA
R:
GCTCACATCATGTTGGACAAGC
Band lengths:
222-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]