HsaINT0003957 @ hg19
Intron Retention
Gene
ENSG00000160323 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:HGNC Symbol;Acc:1366]
Coordinates
chr9:136291319-136293891:+
Coord C1 exon
chr9:136291319-136291465
Coord A exon
chr9:136291466-136293753
Coord C2 exon
chr9:136293754-136293891
Length
2288 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
ACTCCCCGCCCCCCGACCAGCTT
3' ss Score
5.13
Exon sequences
Seq C1 exon
GTTTGACCTGGAGTTGCCTGATGGTAACCGGCAGGTGCGGGGCGTCACCCAGCTGGGCGGTGCCTGCTCCCCAACCTGGAGCTGCCTCATTACCGAGGACACTGGCTTCGACCTGGGAGTCACCATTGCCCATGAGATTGGGCACAG
Seq A exon
GTATGTAGCCCCACCAGCTGTCCCCAGGATCTGGCAAGGAGCTGACCTGGGTACCCAGGGTGGAGGTGGTCTTAGCAAGCAGTGGGTCCTTGTAGAGTTTCTCCAGAGGAGCCTGTACCCCTCACCCCGACAGACTCAGGTGTGAGGACAGGGGAACCTGATACTGTTTGATTAAAAGAACTTTTTTTCCAAAAGACGAGCAAGACACCTTTAGCAGGTAGAAAATAACTTCTGTAGAAAATTCAGGTAAAGAAAGAGCAGGCTGTAAAAATTATCTCAAATCCCACCATTTAGAGATAATGTCTCTTCACATTTTGTATTTAATTTCAGTCTTTTCTTTACATACACACACATATTTCTTATTTGCAAAATTGGGATTTAGTTTGGATCCCTGAAAAAAAGGAAAATTGTGATTATGCTGTGCATTGCTTTGTTACCTGCTATTTCTTTTTCTTTTCTTTTCTTTTTTTTTTTTGAGATGAAGTTTCGCTCTTGTTGCCCAGGCTGGAGGGCAATGACGTGATCTCAGCTCATTGCAACCTCCACCTCCTGGGTGCAAGTGATTCTCCCACCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGTGCCACCACGCCCAGCTAATTTTGTATTTTTAGTAGAGACAGGGTTTCTCCATGTTGGTCAGGCTGGTCTCGAACTCCCAACCTCAGGTGATCCACCTGCCTCGGTCTCCCACAGTGCTGGGATTACAGGCGTGAGCCACTGCATCCAGCCTTTCTTTTTTCTTCCTAGGGTAAGTGCAGGATTTACCTGTTCTTTATGTAATAATATATCCCAAACATTATCCCAGGTATCTTAGAGGTGTGCACCGTAATTTATTTAATCAGTCCCCTCTTCTTGGATGTCTAGGTTGTCTGAACACGTCTTCCTGTTGTGAATGTTATGCATTCTTGTGGGCAAACCTTCACTCTTACCTATAACCATTTACCTAGAGTGATGGGTTTCTTTTCATTTCTTTAGTTTTTTAAGTATGAAAATAATACCCAATTGTTGTAAAAATTCAAACAGTGCAGAGATTTCTAAAGTAAAAAGTGAATTTCCACATTCCTTGCCCACCAACCCCCACCCGACCCCTTTCAACCCCTCTGAGCCTGGGAGGGTTGAGGCAGGGTTCCTGGGTGTGGGACAAGGCAGGGCTCCTTCTCCCTCAGAGGGAGCATAGTTCCCTTCTGCTCCTGTGATGCAGAAGACGTGAGCCCCCAAACTGGGGCTTAGCCTGGGAGGGTTCTTGGCTTCACCGAGGAAAGAATTCAAGAGGGAGCAGGTGGTGTTAGACAGCAACTTTGATTGATGTGGCAGTGGGCAGAGTGTACAGCCCTGTGACTGTATACAGCACAGCATAGCCCCTTTTGAAGCCAGGCTACCCCATAGACACTGTGCCCAAAAGAGCAGCTCAAAGGCAGGGCTGCAGTCCTAGTTAATACCCACTTCTAATTATATGCAAATTAAGGGGCCAGATTATGCAGAAATTTCTAGAAAAAGGGCAGTAACTTCTAGGTTTTCGTCATGGAAAAGGGGCAGTAACTTCTGGGTTTTGCCATGGCAATGGCAAACTGGTATGGCACACTGGTGGGCGTGTCTTATGGAAAGGGGCTTCCCACCCCTCCCTGTTTTAGCTAGTCCTCTGGTCCAGTGTCCAAGCGGGGCCTCCAGAGTGGAGTCCACCTCCTACCTCACCGGTGCCTGGCCTCTCCCACCCCATTAGGAGTCCTCCATCAGTTCCGCTTTGGGTAAAGCAAGCTCTGTTGTGACAGTTTGGAAACGGTTCACCTTCCTGGCCTAGGAATGCAAACAATGGCCAAGGGCAAGCACGTTTTAACTGAACTTTAAAATCGTGCTTTCCTCACAGTAGGTGAATTTCACGCTCAACACATCCATGTAAACAGTCCCCAGAGCAGCCCTTCAAGGCCCCGGCCAGTCCCCACCTCCCCACAGACTCCTAACACCATGATTTAATGTGGCTTGCACATTTTTAAAGGCTTTTGATATTTATTAGCAAAAGATGCGAGAGCCACCCTGCTGGGCTAGCGCTCCCTTCTGGGGGAAACTGAGGCAGGGCGCACGCGACCCTCTCCACTGCGCCCAGTTAGCAGATGGCGGCGTCAGGGGTCGACCCGGGTCGGAAAACTCGCTGGCGCTGCGGCACTAGGGCGCCGGGCCGCTGACTCGCCGACCCCCGTCCCGCCCCCACCCCCGCCCCCGCCCCTGCCGGCCGCCTTAGCGCAACTCCCCGCCCCCCGACCAG
Seq C2 exon
CTTCGGCCTGGAGCACGACGGCGCGCCCGGCAGCGGCTGCGGCCCCAGCGGACACGTGATGGCTTCGGACGGCGCCGCGCCCCGCGCCGGCCTCGCCTGGTCCCCCTGCAGCCGCCGGCAGCTGCTGAGCCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160323-ADAMTS13:NM_139027:6
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=NA C2=0.221
Domain overlap (PFAM):
C1:
PF135821=Reprolysin_3=FE(40.5=100)
A:
NA
C2:
PF0142114=Reprolysin=FE(22.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)