GgaINT1005477 @ galGal4
Intron Retention
Gene
ENSGALG00000003028 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr17:6910264-6910853:+
Coord C1 exon
chr17:6910264-6910410
Coord A exon
chr17:6910411-6910718
Coord C2 exon
chr17:6910719-6910853
Length
308 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
CAGTGCTTTTTCTGTTACAGTCT
3' ss Score
8.13
Exon sequences
Seq C1 exon
GTTTGACCTGCAGTTACCCGATGGGAACAAGGAGCTACGTGGAGTGACTCGGTTAGGTGGGGTCTGCTCCTCCTCCTGGAGCTGTGTTATTACCCAGGACACTGGCTTTGACTTGGGAGTCACCATAGCCCATGAGATTGGGCACAG
Seq A exon
GTCAGTAGGAAAGGCCCAGAGCAACACAGTGTGTTTTATTCAGGGGGAAACACTTCCTATTTTAAAGGATTCAAGAGAAAGAAAAGGATCTCTTGTCATAACATTGGGCTTCCTATAGATTATTTAAAACTCCTGTGAAGAGTTCCTTTGCATTTCTGCAAGTTCTGGGACAATTATAAGCTTTTATGACAAGTGTAGAAGGAAGGGCTCTGCAGAGCCTTGCTTAGATACTTAGAGATAACAGAGGTGCTATGGGAACGAAAAACCTCTGGTTTCCTTCTCAGAGCGCAGTGCTTTTTCTGTTACAG
Seq C2 exon
TCTTGGCATCCCCCATGATGGTGAGGGGAATCAGTGCAGCAGCAGTGGTTTCATCATGGGCTCAGCAGGAAACCGTAATAGTGTTGACCTCATCTGGTCACAGTGTAGCCGAGAAGAATTCTTGGCCTTTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003028:ENSGALT00000004792:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0142114=Reprolysin=FE(23.8=100)
A:
NA
C2:
PF0142114=Reprolysin=FE(21.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGACCTGCAGTTACCCGA
R:
CAAAGGCCAAGAATTCTTCTCGG
Band lengths:
278-586
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]