MmuINT0011193 @ mm10
Intron Retention
Gene
ENSMUSG00000014852 | Adamts13
Description
a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 13 [Source:MGI Symbol;Acc:MGI:2685556]
Coordinates
chr2:26978551-26981215:+
Coord C1 exon
chr2:26978551-26978697
Coord A exon
chr2:26978698-26981068
Coord C2 exon
chr2:26981069-26981215
Length
2371 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
AGAATTTCTTCTGCCCACAGCTT
3' ss Score
7.63
Exon sequences
Seq C1 exon
GTTTGACCTGGAGTTGCCTGATGGCAACCAGCAGGTTCGGGGTGTCACCCAGCTGGGAGGTGCCTGCTCCCTTTCCTGGAGTTGCCTTATCACTGAGGATACTGGCTTTGACCTGGGGGTCACCATCGCCCATGAGATTGGGCACAG
Seq A exon
GTATGTGGCCTCACCAGTTATCCCCAGACTGGTCAGAGAGCTGATCTGAACCCCAGGGTCGAGCTCTGTGGCCCAGGCAGGAAACGAATCTTTGCAGAAGAGCCAGTCAGAGGCCTACACCCCTTAGCCTAAGTGTCTTGGTAGGGAAAGCTGAGATCGGGGAAATCTGATGCTTCTTGATTACTGAGCGATCAACAGCTATTAGAAAACAATAACTTAATATTTAAGATTTTAAAGTTGTATTGGGCGGGGGGGGGGGAGAGAAGGAGACACACACACAGGGAGAAGGGGGGAATCACACCACATCATGCATATAGAAGTCAGAGGACAACTTGGCAGTTGGTTCCCATCTTTACATAGGTTCTGGGAATTGATCATTAGGCTTTTGGAGCAAATGTCTTTACCCACTGAGCCATCCAGAAAATAAGTCTTGCCAGGAATTCCAGTAAAGAAACAAACCAAACTGAAGTTTATCCTGAGTCCATGCAATGTCTTAGCTACTGTTCTAACACTGTGAAGAGACATCTTGACCAAGGCAACTCTTACAAAAGAAAGCATTTAGTTGTGGACTTGCTTACAGTTTCAGAGGGTTAGTCCATGATTGTTACAGCAGGGATAAGAGTGGCACACAGGCAGGCATGGTGTTGGAGCAATAAGCTGAGAGCTTTATATCCTGACCCATAGGAAGGCAGGCAGAGAGAGGGAGACGCTGGGCCTGCCACAGGCTTTTGGAGCCTCAAAGCCTACCTCTAGCCACACACCTACTCCAAAAAGCCACATCTCCTAATCTTTCCAAATTCTTCATCTGTTGGGGGCTTAACATGCAAATAAATGGGGGAAGTGCTTTCTTAGTTAAACTACCACACACCACTTATGGAATGTCTTTTCAGATTTACATTTAATTTTGGTCATTAATATGCACATATCAGGCTTGTGCAATACTTTGTTATTTTGATTCTATTGTGGGTTTTTTTTTTTTTTTTTTTTGGTTTTGGTTTTGGTTTTTCGAGACAGGTTTCTCTGTATAGCCCTGGAACTCCTGAAACTCACTTTGTAGACCAGGCTGGCCTTGAACTCAGAAATCTGCTTGCCTCTGCCTCCAGAGTACTGGGATTAAAGGCATGTGCCACCACGCCCGGCTCTACTGTGGTTTTTTTTTTACTTGGCCATCCGATAACTGTTGGGTAGGATTACAGGTGTGTACCACCAGCCCTTATAACTCTTGTCTTTTTTTTTTAAAGATTTATTTATTTATTATGTGTAAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGAGTCAGATCTTGTTATGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCGGAAGAGCAGTCGCGTGCTCTTACCTGCTGAGCCATCTCACCAGCCCCAACTCTTGTCTTTTAATATATCAATATATCCCAAATGTTTCTCAGCTCATAGATCTCTTATGTTTTATGTTTGTTTGTTTGTTTGTTTGTTTTGTACACACAACAACGTAATCCTCCTGGTTCGGCCGTTAGGGTGTTTTGAGTCCTTGCTTCTGTGTGTAGTATGTATTCTTGTTGGCAAATTCCTGTGTATTATCATTTTATCTAGAGTGATGTGTTTCTTTTCTTTTTGATTTTTAGCTGTTTTAGTTGTTGTTGTTCAGAAAAATATTATCCAATTGTTATAAAACATCAGGTGACATGGAAATGAGCAGAGCATAAAATGAAAGTTTCCTTCCTGATAACCTAGCAACTCTGCACTGGTATAGGCTCCCAGGGGTGGAAGCCAGTCTCTACAGACCTCCCCAAGGGTCTGGCCCCAGCAGCTTTTGCACATACTGCCTCACCCCCCAGCCCCTTAGGCTCCTAAGTCTGTTCTGCATGAAGTGGGGGGATGGGATGATATTCAGGCCTTGCTTCAAAAACAAACAAACAAACAAAAAAAAACTACCACCTGGTAACAGACAGGAAGACAGCAACATCTCCTCGGTCTCTTCAACTACAAGGCAGCTGCAGGTGGATAGATTTCTCAAACCCAAACACATTCAGGCCATCAGTCACTGGAAGGGTAACCTGTTGACCTACCTGGCTCCTGGTTCCCATGTCTACACCCTAGACTTGTAACCATGCATTAGGTCAGCTGATCTCTCATCAAAACCTTTTGCTATTTATTAGCCAAAGGAAGAAAGAGCCACCCTGCTCAACCAGCTCTTCTCCCTTCCTCACATAGGTGGGAAACTGATTCTAGGATTCCTTGTGGGCTGACTTAGCTAGTAGCAGGGTCCAGGTCTAGGAGACACAAAGATGGCTTGACCCAGCCCCAGCTGGCTACTCTCAGAATTTCTTCTGCCCACAG
Seq C2 exon
CTTCGGGCTGGACCATGATGGTGCTCCAGGTAGTGGCAGCACCTGCAAGGCCAGTGGCCACGTGATGGCGGCTGATGGCGCAACACCTACTGGAGGGACCCTGGAGTGGTCTGCCTGCAGCCAAAGGCAGTTGCAGCACCTACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000014852:ENSMUST00000102891:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.040
Domain overlap (PFAM):
C1:
PF0142114=Reprolysin=FE(23.6=100)
A:
NA
C2:
PF0142114=Reprolysin=FE(23.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types