HsaINT1002778 @ hg38
Intron Retention
Gene
ENSG00000160323 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr9:133426199-133428771:+
Coord C1 exon
chr9:133426199-133426345
Coord A exon
chr9:133426346-133428633
Coord C2 exon
chr9:133428634-133428771
Length
2288 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
ACTCCCCGCCCCCCGACCAGCTT
3' ss Score
5.13
Exon sequences
Seq C1 exon
GTTTGACCTGGAGTTGCCTGATGGTAACCGGCAGGTGCGGGGCGTCACCCAGCTGGGCGGTGCCTGCTCCCCAACCTGGAGCTGCCTCATTACCGAGGACACTGGCTTCGACCTGGGAGTCACCATTGCCCATGAGATTGGGCACAG
Seq A exon
GTATGTAGCCCCACCAGCTGTCCCCAGGATCTGGCAAGGAGCTGACCTGGGTACCCAGGGTGGAGGTGGTCTTGGCAAGCAGTGGGTCCTTGTAGAGTTTCTCCAGAGGAGCCTGTACCCCTCACCCCGACAGACTCAGGTGTGAGGACAGGGGAACCTGATACTGTTTGATTAAAAGAACTTTTTTTCCAAAAGACGAGCAAGACACCTTTAGCAGGTAGAAAATAACTTCTGTAGAAAATTCAGGTAAAGAAAGAGCAGGCTGTAAAAATTATCTCAAATCCCACCATTTAGAGATAATGTCTCTTCACATTTTGTATTTAATTTCAGTCTTTTCTTTACATACACACACATATTTCTTATTTGCAAAATTGGGATTTAGTTTGGATCCCTGAAAAAAAGGAAAATTGTGATTATGCTGTGCATTGCTTTGTTACCTGCTATTTCTTTTTCTTTTCTTTTCTTTTTTTTTTTTGAGATGAAGTTTCGCTCTTGTTGCCCAGGCTGGAGGGCAATGACGTGATCTCAGCTCATTGCAACCTCCACCTCCTGGGTGCAAGTGATTCTCCCACCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGTGCCACCACGCCCAGCTAATTTTGTATTTTTAGTAGAGACAGGGTTTCTCCATGTTGGTCAGGCTGGTCTCGAACTCCCAACCTCAGGTGATCCACCTGCCTCGGTCTCCCACAGTGCTGGGATTACAGGCGTGAGCCACTGCATCCAGCCTTTCTTTTTTCTTCCTAGGGTAAGTGCAGGATTTACCTGTTCTTTATGTAATAATATATCCCAAACATTATCCCAGGTATCTTAGAGGTGTGCACCGTAATTTATTTAATCAGTCCCCTCTTCTTGGATGTCTAGGTTGTCTGAACACGTCTTCCTGTTGTGAATGTTATGCATTCTTGTGGGCAAACCTTCACTCTTACCTATAACCATTTACCTAGAGTGATGGGTTTCTTTTCATTTCTTTAGTTTTTTAAGTATGAAAATAATACCCAATTGTTGTAAAAATTCAAACAGTGCAGAGATTTCTAAAGTAAAAAGTGAATTTCCACATTCCTTGCCCACCAACCCCCACCCGACCCCTTTCAACCCCTCTGAGCCTGGGAGGGTTGAGGCAGGGTTCCTGGGTGTGGGACAAGGCAGGGCTCCTTCTCCCTCAGAGGGAGCATAGTTCCCTTCTGCTCCTGTGATGCAGAAGACGTGAGCCCCCAAACTGGGGCTTAGCCTGGGAGGGTTCTTGGCTTCACCGAGGAAAGAATTCAAGAGGGAGCAGGTGGTGTTAGACAGCAACTTTGATTGATGTGGCAGTGGGCAGAGTGTACAGCCCTGTGACTGTATACAGCACAGCATAGCCCCTTTTGAAGCCAGGCTACCCCATAGACACTGTGCCCAAAAGAGCAGCTCAAAGGCAGGGCTGCAGTCCTAGTTAATACCCACTTCTAATTATATGCAAATTAAGGGGCCAGATTATGCAGAAATTTCTAGAAAAAGGGCAGTAACTTCTAGGTTTTCGTCATGGAAAAGGGGCAGTAACTTCTGGGTTTTGCCATGGCAATGGCAAACTGGTATGGCACACTGGTGGGCGTGTCTTATGGAAAGGGGCTTCCCACCCCTCCCTGTTTTAGCTAGTCCTCTGGTCCAGTGTCCAAGCGGGGCCTCCAGAGTGGAGTCCACCTCCTACCTCACCGGTGCCTGGCCTCTCCCACCCCATTAGGAGTCCTCCATCAGTTCCGCTTTGGGTAAAGCAAGCTCTGTTGTGACAGTTTGGAAACGGTTCACCTTCCTGGCCTAGGAATGCAAACAATGGCCAAGGGCAAGCACGTTTTAACTGAACTTTAAAATCGTGCTTTCCTCACAGTAGGTGAATTTCACGCTCAACACATCCATGTAAACAGTCCCCAGAGCAGCCCTTCAAGGCCCCGGCCAGTCCCCACCTCCCCACAGACTCCTAACACCATGATTTAATGTGGCTTGCACATTTTTAAAGGCTTTTGATATTTATTAGCAAAAGATGCGAGAGCCACCCTGCTGGGCTAGCGCTCCCTTCTGGGGGAAACTGAGGCAGGGCGCACGCGACCCTCTCCACTGCGCCCAGTTAGCAGATGGCGGCGTCAGGGGTCGACCCGGGTCGGAAAACTCGCTGGCGCTGCGGCACTAGGGCGCCGGGCCGCTGACTCGCCGACCCCCGTCCCGCCCCCACCCCCGCCCCCGCCCCTGCCGGCCGCCTTAGCGCAACTCCCCGCCCCCCGACCAG
Seq C2 exon
CTTCGGCCTGGAGCACGACGGCGCGCCCGGCAGCGGCTGCGGCCCCAGCGGACACGTGATGGCTTCGGACGGCGCCGCGCCCCGCGCCGGCCTCGCCTGGTCCCCCTGCAGCCGCCGGCAGCTGCTGAGCCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160323:ENST00000371929:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=NA C2=0.272
Domain overlap (PFAM):
C1:
PF135821=Reprolysin_3=FE(40.5=100)
A:
NA
C2:
PF0142114=Reprolysin=FE(22.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains