HsaINT0008021 @ hg38
Intron Retention
Gene
ENSG00000130812 | ANGPTL6
Description
angiopoietin like 6 [Source:HGNC Symbol;Acc:HGNC:23140]
Coordinates
chr19:10095982-10102796:-
Coord C1 exon
chr19:10102568-10102796
Coord A exon
chr19:10096574-10102567
Coord C2 exon
chr19:10095982-10096573
Length
5994 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
CGTTCCTCCTCTGCCTGCAGGTC
3' ss Score
12.55
Exon sequences
Seq C1 exon
CTCATTCGGGAAATGCTAAATATTTATAGTTTGGGCTCCTGGGCCCAGCATCCCAGCTCCACTCCCAGGCTCTGGGGGCTGGGGAGTGGTTACCAAGCCTCCTCTCTCCTTCTGTCCCACTGCCCTCTCCCCGTCTCTAGCTCAGAGGCCCCACTGGACCCTCGGCTCTTCCTTGGACTTCTTGTGTGTTCTGTGAGCTTCGCTGGATTCAGGGTCTTGGGCATCAGAG
Seq A exon
GTGAGAGGGTGGGAAGGTAGGTGGAGGTTGATTCTCACTGTGGGGAAACTCCGACCACAGCTTGGCTTGGGGGCCCCCAGGCCACCCCGCCACCCCAGGCTGAGAGTGTAAAAGGCAGCGGGTGTTATACACACGTCCCAGTTCTGGGGGGTTGCTCAATCTCTGTTGTGGGGGGTGGGGCATGTCAGTGATCGGGGACAAAGAGAGGACCCTACCCCCGGATCCTTGTGAGCCCCTGCTTGGTGTCTGAGTCCAGAAGTAAATGTGGCCATCTCCAGCCCAGAACCCTCCATGGCTCCTGCCTGACTCAGAGTAAAACCCAAGTCCTCCTCCGGGCCCACAGGACCCTTCACACTTTGCCCTGACACTTCTTACCTCCTCCTGCTTCCCCCTTCTCTCTTCCGGCCTCATAGACATTTCTGCCATTTCTTTTTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGCGATCTCAGCTCACTGCAAGCTCCGCCTTCCGGGTTCACGCCATTCTCCTGCCTCAGTCTCTGGAGTGGCTGGGGCTACAGGCGCTCGCCACCATGCCCGGCTAATTTTTTTTTTTTTTTTTGTATTTTTAGTAGAGACGGAATTTCACTGTGTTAGCCAGGATGGTCTCGATCTCCTGACCCCGTGATCCACCTGCCTTGGCCTCCCAAGTGCTGGGATTACAGGCGTGAGCCACCGCACCTGGCCTTTTTTTTTTTTTTTTTTTTGAGCCTTGCTCTGTCGCCCAGGTTGGAGTGCAATGGCGCAATCTCTGCTCACTGCAACATCGGCCTCCTGAGTTCAAGTGACTCTCCCACCTCAGCCTCCTGAGTAGTAGCTGGGATTACAGGCATGCATTACCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCTCGACCTCAGGTGATCCTCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGTGCCTGGCCCCTTTCTGCCATTTCTTGGGTGCAATCTCCGGGCCTTTGCACCTGCTGTTCTCTCTGCCTGGAATGCTCTTCCTCTTCTCTCTCTTCCATCAGGTCTTTGTGAAAGTGTCCCTTATTCTTTATTTTATTTTTATTTTTATATTTAGTAGAAATGGACTTTCACCATATTGGCCAGGCTGGTCTCAAACTCCTAGGCTCAAGCAATCCTCCTGCCTTGGCCTCCCAAAGTGCTGAAATTACAGGCATGAGGCACTGTTCCAGTCAAGTGTCACTTCTTCTGTGAGGCCTTTCCTGACTCCTCTATTTTATTTTTTTTTGAGACAGAGTCTCGCTCTATTGCCCAGGCTGGAGTGCAGTGGTGCAATCATGGCTCACTGCAACCTCTGCCTTCCGGGTTCAAGTGATTCTTGTGTCTCAGCCTCCTGAGTAGCTGAGACTACAGGCGCGTGCCACTACGCCTGGCTAATTTTTGTATTTTCAGTAGAGACAGGGTTTCGCCACGTTAGCCAAGCTGGTCTCAAACTCCTGGCCTCAAGTGATCCTCCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGTCAGCACACCCAGTCCTGACTCCTCTATTAAATGTCCCCCACCTCCGGGACTGTCACCCCCTTGCCTGTTCCATTTTTCTCCTAAGCACGATTACCCTCTGACCTACCTAGCGGCTGTTTGACTTATTTCTCTGTTCTCCCAACTTGAATGTCAGCTCTGCAAGGGCAGGAATTTTGTCTGTTTGGGTTAAGGCTGTGTCCTCATTGCCTAAAACAGCATCCCTGGCACACAATAGGCACTCAAGGTGTCTGTGGTTGAATGCATGAATGAGGCAATGTGTGTGTGAGATGGAGACCCTCGGGATATGTGCTTGTGCAGGCATCAGGAAGCATAGGTTTAGGGCCAGTGTGGTTGCTCACATCTGTAATTTCAGCACTTTGGGAGTCCAAGGTGGGAGGATCACTTGAGCCTGGGAGTTTGAGACTAGCCTGGGCAACACAGTGAGACCCCCTCCCTACAAAAAAGTAGCTGGGCATGGTGGTGCGCACCTGTAGTTCCAACCACTCAGGAGGCTGAGGCAGGAGGACCACTTGTGTGCAGGAATTGGAGGCTACAGTGAGCTATGATTGCTCCACTGCACTCCAGCCTGGGCAACAGAGCACGACTCTCTCTTTTTTTTCTTTTTTTTTGAGATGGAGTCTCACCCAGGTTGCCTAGGCTAGAAGGCAGTGGTGCGGTCTCAGCTCACTGCAACCTCTGCCAGGTTCAAGCCGTTCTTCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCATGCGCCACCACGCCCAGCTAATTTTTTGTACTTTTAGTAGAGACGGGATTTCACCTGTTGATCAGGCACCCTGTCTCTACTAAAAATACAAAAATTAGCTGGGTGTGGTGGCGCATGCCTGTAATCCCAGCTTCTTGGGAGGCTGAGGCACAAGAATCACTTGAACCCGGGAGGTGGAGGTTGCAGTGAGCTGAGATTGCAGAGCGAGACTCCGTCTAAAAAAAAAAAAAAGAGGGCGTGGGGGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAAAGAGAGAGAGAGAGAGGGAGAGACAGAGAGAGAGAGAGCTTGTATATGGAGGTACAACCCTAAATCTGCTGTTCAAGGAGCGCTGCTGAGACTTGAATAAGGATAGGAAGGGAATGATGTTAAGTTGTGAACAATGTTCCAGGCTGCAAAAACAGCAGGTACAAAGGACCTGAGGCTGGAACTTGCTTCGTGTGAGGAAGGGCCTGGGAGGAGGGCAGAAGGGGATATGGCAGATAGCACAAGTTTTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTTGCTCTGTTGCCCAGGCTAGAGTGCAGTGGCACAGTCTCGGCTCACTGCAAGCTCTGCCTCCCGGGTTCAAGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCAGCCGCCACCACGCCTGGCTACTTTTTTTGTATTTTCAGTAGAGACGGGGTTTCACTGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCGCCTCCGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGTCACCAAGATAGCGCAACTTTTTATGGATCATGGGTGGATTTGGGCTTTTCCTCTAAAGGAGGTGGGAGCCAAGAAGGATTCAGGGCAGAGGAGGGAGGGAGGGACGTGAACTGACTCAGATGTTCACAGGCGCCCTCTGGCTGCTGTCAGAGAGACTAGACCTGGGGTTGAGGATGGAAATCCAGAGAGCAGGGAGGCAGCTGCTGTCATCCAGATGGTGTCTTGAGCTGGGAATTCAGGGAGGGTCTGGGGGCAGTGGGGAGTAGCGGAGACGTGGAGGAATTCAGGATCTAAGCAGAAGAGCAGACGGGTCTGGCTGATGGATTAGATCTGCTGAGATGGGTTGGATCTGCTGGGGTTTTGGTCTGAGGACGTGGAAGATGGGGTTTCCAATATCCGACGGATGGGAAGGCAGTTAGTGAGACGTTTCCCTCACCCCACCTCACCTCCTTGCACCCTGCTCCCTTTGCTATTTTTTTTTTTTGAGACAGTGTTTTGCTTTTGTTGTCCAGGCTGGAGTGCGGTGGTGCGATCTCGGCTCACTGCAACCTCCACCTCCCAGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGAGATTTCAGGCCTGTACCACCACACCCGGCTAATTTTGCACTTTCAGTAGAGATGGGGTTTCACTATGTTGGTCATGCTAGTCTCGAATTCCTGACCTCAGGTGATCCACCCACCTTGGCCTCCCAAACTGCTGGGATTACAGACATGAGCCACAGCACCCAGCCTCCCTTCGCTTTTGCTTTAACCTCTCCCAGGTTGCTTTAATACATCAGGCAGGGTCCAGTCTCAGAGCTTTTGCACTTAGATCTGCTCCTCCACCAGGCCTTCCCTTTAGGCAACCCCCTCTCAAGCTGCCCCTGCACAGACCTGCGTATTCTTTACCTAGTTTGCTGTTTTTTGTTATTGTTTTGTTTTAAGAGACAGGGTTTGCTCTCGTCCCCAGGCTGGAGTGCAATGCTGCGATCATAGCTCACTGCAGCTTCAAACTCCTGGCCTCAATCGATCCTCCCGCCTCTGCCTCCCAAAGAGCTGGGATTACAGGTGTGAGCCACTGAGCCCAGATTTACAAAATAGTTTAAAAATTAGCAGGGCATGGTGGGTCACACCTGTAATCTCAGCATTTTGGGAGGCAGAGGTGGATCACTTGAGGCCAGGGGAGACCAGCCTAGGCAACATAGCAAGACCCTGACTATACAGAAAATTTAAACATTAGCCAGATGTGGTTCTGTGCACTTGCAGTTCCTTTTTTTTTTTTTTTTTTTGGTAGAGACAGGGTCTGGATACGTTGCCCAGTCTGGAGTCTGGTCTTGAATTCCTGGCCTCAAGCAGTCTTCCCGCCTTAACACAGGCCTGAGCCGCCTCACCAGTCCTACTGTTATTTTTATATTTATTATTTTATTTTATTTTATTTTTTTGAGATGGAGTCTCGCTCAGTCACCCAGGCTGGGCTGCAGTGGCACAATCTCGGCTCACCGCAAGCTCTGCCTCCCAGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAAGTGCCCGCCACCACGCCCAGCTAACTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCTTGACCTCGTGATCCACCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGAGTGAGCCACCGCGCCTGGCCCTACTGTTATTTTTAGCATTTAACATTGTCTAATATGCTCTATTTATTCATCCTATACAGTACATATTTATTTTTTTGCCCACTAGGGGAGGGATTTTTGTCTGTTTTGTTCCTAAATGTATTCCCAGTGCCTAGAAAGGGGGCTGGCACACATTTGTGCCTAGTGACTGCTTTTTTTTTTTTTTCTTTTGAGACAGAGTCTTGCTCTGTCGCCCAGGCTTGAGTGCAGTGGCGTGATCGCAGCTCACTGCAGCCTGGAACTGCTGGGCTCAGGCGATCTTGGGATGACAAGCCCTTGCCACCATGCCCAGCTAATTTTTGTATTTTTTGTATAGACAGGGTCTCTCTGTGTTGTCTAGGCTGGTCTCCAACTCCTAGGCTCAAGTGATCAGCCCACCTCGGCCTCCCAAAGTGCTGGAATTACCGGCCTGAACGGCCCCATAAGCCTTGTTTTTATTTATTTATTTATTTTTGAGATGGGCTATCACTTTGTTGCCCGGGCTGGAGTGCAGGGGAGCGATCATGGCTCACTGAAGCCTTGAACTCCTGGGCTCAAGTGATCCTCCTGCCTCAGCCTCCCGAATAGCTGGGACCAGAGGTGTGCACCACCACGTCTGTCTAATTTTTTTTTTTTTTTTTTGTAGAGACAGGGGTCTCCCCATGTTGCCCAGGCTGGTCTCGAACTCCTGGTCTCAAGCGATCCTCTCGCCTCGGCCTCCCAAAGTGCTGAGCTTGCAGGCGTGAGCTACGGCGCCCGGCCTCGCTTGTCGAATGAATGAATGCTTGAGATGCGTTATCCGGCCTGGCGCCAAGAGCTCGGTGTTGAAGCCAGAGTGGGATCACCCTGGGGCCCTCCAGCCGTGGGGGGAATGAGATGGGGACTGAAATTATGGGCCCGGGACATCGCGGGTGTAGACGCGCGCATCCCCGCGTGGAAGCGGAGGGGTCTCGCTGGGCCCCAGCACCCCGTCTTCCTTCCGTTCCTCCTCTGCCTGCAG
Seq C2 exon
GTCCGCCGCGATGGGGAAGCCCTGGCTGCGTGCGCTACAGCTGCTGCTCCTGCTGGGCGCGTCGTGGGCGCGGGCGGGCGCCCCGCGCTGCACCTACACCTTCGTGCTGCCCCCGCAGAAGTTCACGGGCGCTGTGTGCTGGAGCGGCCCCGCATCCACGCGGGCGACGCCCGAGGCCGCCAACGCCAGCGAGCTGGCGGCGCTGCGCATGCGCGTCGGCCGCCACGAGGAGCTGTTACGCGAGCTGCAGAGGCTGGCGGCGGCCGACGGCGCCGTGGCCGGCGAGGTGCGCGCGCTGCGCAAGGAGAGCCGCGGCCTGAGCGCGCGCCTGGGCCAGTTGCGCGCGCAGCTGCAGCACGAGGCGGGGCCCGGGGCGGGCCCGGGGGCGGATCTGGGGGCGGAGCCTGCCGCGGCGCTGGCGCTGCTCGGGGAGCGCGTGCTCAACGCGTCCGCCGAGGCTCAGCGCGCAGCCGCCCGGTTCCACCAGCTGGACGTCAAGTTCCGCGAGCTGGCGCAGCTCGTCACCCAGCAGAGCAGTCTCATCGCCCGCCTGGAGCGCCTGTGCCCGGGAGGCGCGGGCGGGCAGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130812:ENST00000253109:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.167
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development