MmuINT0015036 @ mm10
Intron Retention
Gene
ENSMUSG00000038742 | Angptl6
Description
angiopoietin-like 6 [Source:MGI Symbol;Acc:MGI:1917976]
Coordinates
chr9:20878049-20879727:-
Coord C1 exon
chr9:20879603-20879727
Coord A exon
chr9:20878604-20879602
Coord C2 exon
chr9:20878049-20878603
Length
999 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
CTCTTTCCTCTTCACTGCAGGTG
3' ss Score
11.5
Exon sequences
Seq C1 exon
AGTCTCCTGCACCCAGATACTCACCCAGAAGGACTCCCGGTCCTTCGTCCTGGTCCTTCAGGCCTTCCTCAGATTTTGTGGAATTGCCGCAAACCTCACTGGAGCCAGCGTCTGGGCTGTGAGAG
Seq A exon
GTGAGAGTGGGTAGGAGTGGATGTAGGTAGATGCTGTTTGTAGAGTGCATCTGGTCTTGATTGTGTGTGTACGGGTGTGTATGTATGTTGTCTATGTATGTGCATGTATATGTATGTGCGTATGTATGTATGTGTATGTGTGTGTGTGTGTGTATACGTTGTGTGTGGGGGGGCACAGGGAGGCTCCCAGGTCTCTCATTTACTCCAAGCTTGCCAACGAAGGCGGCCACATGTGCCCAAGACTGCCCAGTGCTTGGGAGCTGACGCCTGATGAGCAGCCACTGTAGTTGATGTACCTTGCCTCTAGCTCAGAAGTTTCCACGGCTCTCTCACTTCCCTTCTATGCCACCCCACAGGCCTCTTTGCTATGTCTTCTTTTCAGCACATCTGAAATGAGATCCAATTCCAGGACCTTTGCACTTGTGGTTTCTTCTGAGCAGGTCCAAGTGTGTGCCCGAGTGCCTGGGAGTGGTGGCATAGGGCCCTGGGTGTGAATTCTGCAGGGCAGGAGTGGGGAGTCACGAATATTAACCTGGTATGGTGGCACACACAAGCCATCTAGGGATGAAGAGGCCCAGGCAGTAGCATCCTAACCTAGTTCGGTAACAGACTGGGCTACTAGTGACACCATGTCTCAAATTAGAAAAGAGGGGCCCAGCATGAGTGATGGATGTTCCATCCCCTGCACGCCCCGCCCCCCACGCAAAATGGAAGTTTTCTCTTTAAGTGGGGGCCACCGAAGGTTCTGAGGGGAGAGGTGACCAGGTCCAAGTGTCCGGAACCGAGGATGGAGAGGGATTTGGGGTGTAAAATGATTCTGGTTGTTGTATGAACTGTGGTAAACGGACAATCTGCGCTGCGAGCTGCAGCCCAGCTCTGTTGTGGAGTACAACCGTAGGAAGTGACGCCCAGGGATCAATACTTTAGCTCTCCTTGGCTACCTTGGAGCTTTGGGACCCGTCTAGGCTAAAACAGTAGTCTCTTTCCTCTTCACTGCAG
Seq C2 exon
GTGACGGCCATGGGGACCGCCAGGCTACGCAAGCTGCAACTGCTGCTTCTGCTGGGCGCTTGGAGGGCGCTCGGAGGTGCCGCGCGTTGCCGCGTCACCCTAGTTTTGTCCCCGCAGAAGGCAACTAGCGCCGTCTGCAGGAGCTCAGAAGCCACCCAAGACAGCGAACTGGCCACGCTGCGCATGCGCCTGGGTCGCCACGAGGAGCTGCTGCGCGCGCTGCAAAGGCGTGCGGCGGAGGGTGGTGCGCTCGCGGACGAGGTGCGCGCACTGCGCGAGCACAGTCTCACCCTGAACACGCGCCTGGGCCAGCTGCGCGCGCAATTGCAGCAGGAGGCGAGGGCGGAGCCTGACCTGGGGGCGGAGCCTGCTGCTGCACTTGGTTTGCTAGCCGAGCGCGCGCTGGACGCTGAGGCCGAAGCGCGCCGGACGACGGCACGCCTGCAGCAGCTGGACGCACAGCTCCGTGAGCATGCGCAGCTCATGAGCCAGCATAGCAGCCTCCTCGGCCGCCTGCAACGCGCGTGCGCGGGCCCGGAACGGGGACAGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038742:ENSMUST00000043726:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.354
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATTGCCGCAAACCTCACTG
R:
CGTGTTCAGGGTGAGACTGTG
Band lengths:
345-1344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types