RnoINT0017330 @ rn6
Intron Retention
Gene
ENSRNOG00000020603 | Angptl6
Description
angiopoietin-like 6 [Source:RGD Symbol;Acc:1311141]
Coordinates
chr8:21900154-21901829:-
Coord C1 exon
chr8:21901720-21901829
Coord A exon
chr8:21900709-21901719
Coord C2 exon
chr8:21900154-21900708
Length
1011 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
AATCTCCCTCTTTACTGCAGGTG
3' ss Score
9.76
Exon sequences
Seq C1 exon
CTCCCAGTCCTCCATCCTGGTCCTCTATCCCGGTCCTTCAGGCTTTACTCCGATTTTGTGGGCTTGCGGCAAACCTCACTGGCGCCAGCACCCGCGCCGGGCCGTTGGAG
Seq A exon
GTGAGATCGGGGTAGAAGTGGACATAGGTAGATACTGTTTGTAGAGAGCATCTGGTCTTGTGTGTGTTTGTGGGGGCGGTGGGGAGTATAAGGAGTCTCCCAGGCCTCTTGTTTACTCCAGGCTTGCCAGTGAAGGCAGCCACAAGTGCCAAAGAGAAGACTCTACCCAGTGCTTGGGAGCTCATGCCTGCTGAGCGGCCGCTGTAGCTAGTGCACCTTGCCTCTAGCTCAGAAATTTGCGCGGTTTTCTGTGCTTCAGAGCAGAACCTCCTCAGCTGCTCCTATTTGGTGCTTCCTGTCTCCCGGCTCACTCACCCGCATTTCCCTTCTATGCCACCCTCACAGGCCTCTTTGCTATTTATTCTGTTCAGCACATCCGAAATGAGACCCAGGACCTTTGCACTCATGCTTCCTTCTGAGCAGGTCCAAATGTGTGACTGAGTGTCTGAGAGTGGTGGCATGGGGTCCTGCGTGTGAATTCTTCGGGGCACGAGTGGGGAGTCATGAATATTAACCTGGCTGAAGACACTGTGTGAAGCATGATATGGTAGCACATACAAACTCCGTCATCTAGGGACGGAGAGGCTCAGGCAGTAGGCTCTCAACCTAGTTCCGTAATGGCCTGGGCTAAATAGTGACACCATGTCTCAGATTAGAAATGAGGGGCCCAGCATGAATAAGGTCCAGGGTTCCATCCCCTGTTCGCTCCTCACCCCACACAAAATGGGGGTTTTCTCCTTAAGTGGGAGCCACAGAAGGTTCTGAGGGGAGAGGTGACCAGGCCCACACAGGTGTTCGGAACAGAAGGTGGAGAGGGATTTGGAGAGTAAACAGTTGTTGTATCAGCTGTGGTAAATGGAGACTCTACGCTGCGAGCTGCCGCTCATCAGCTCGGTTGTGGAGCACTACCCTGGAGGTGAAGCCTGGGGATCAATACTTTAGTCCTTCTTTGCTACCTGGAAGTTTTGGTACCTGTCTAGGCTAAAACAGTAATCTCCCTCTTTACTGCAG
Seq C2 exon
GTGGCGGCCATGGGGACTGCTGTGCTGCGCAAGCTGCAGCTGGTGCTCCTGCTGGGCGCTTGGAAGGCGCTTGGAGATGCCGCGCGGTGCCGCGTCACCCTTGTTCTGTCCCCGCAGATGGCGACTAGCGCGGTCTGCAGGAGCTCAGAAGCTTCCCAAGACAGCGAACTGGCCACGCTGCGCATGCGCCTGGGCCGTCACGAGGAGCTGCTGCGCGCGCTGCAAAGGCGTGCGGCCGAGGGTGGTGCGCTCGCGGGCGAGGTGCGCGCGCTGCGCGAGCACAGTCTCACCCTAAACACACGTCTGGGCCAGCTGCGCGCGCAACTGCAGCAGGAGGCGGGGGCGGAGCCTGATCTGGGGGCGGAGCCTGCTGCCGCGCTTGGTTTGCTAGCAGAGCGCGCGCTGGGTGCGGAGGCCGAAGCGCGCCGGACGACCGCGCGCCTGCAGCAGCTGGAGGAGCAGCTCCGTGAGCATGCGCAGCTCATGAGCCAGCATAGCAGCCTCCTCGGCCGCCTGCAACGCGCGTGCGCGAGCCCGGAACGGGGCCAGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020603:ENSRNOT00000027963:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.297
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCGGCAAACCTCACTGG
R:
CCCAGACGTGTGTTTAGGGTG
Band lengths:
356-1367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]