MmuINT0015036 @ mm9
Intron Retention
Gene
ENSMUSG00000038742 | Angptl6
Description
angiopoietin-like 6 [Source:MGI Symbol;Acc:MGI:1917976]
Coordinates
chr9:20682493-20684154:-
Coord C1 exon
chr9:20684047-20684154
Coord A exon
chr9:20683048-20684046
Coord C2 exon
chr9:20682493-20683047
Length
999 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
CTCTTTCCTCTTCACTGCAGGTG
3' ss Score
11.5
Exon sequences
Seq C1 exon
TACTCACCCAGAAGGACTCCCGGTCCTTCGTCCTGGTCCTTCAGGCCTTCCTCAGATTTTGTGGAATTGCCGCAAACCTCACTGGAGCCAGCGTCTGGGCTGTGAGAG
Seq A exon
GTGAGAGTGGGTAGGAGTGGATGTAGGTAGATGCTGTTTGTAGAGTGCATCTGGTCTTGATTGTGTGTGTACGGGTGTGTATGTATGTTGTCTATGTATGTGCATGTATATGTATGTGCGTATGTATGTATGTGTATGTGTGTGTGTGTGTGTATACGTTGTGTGTGGGGGGGCACAGGGAGGCTCCCAGGTCTCTCATTTACTCCAAGCTTGCCAACGAAGGCGGCCACATGTGCCCAAGACTGCCCAGTGCTTGGGAGCTGACGCCTGATGAGCAGCCACTGTAGTTGATGTACCTTGCCTCTAGCTCAGAAGTTTCCACGGCTCTCTCACTTCCCTTCTATGCCACCCCACAGGCCTCTTTGCTATGTCTTCTTTTCAGCACATCTGAAATGAGATCCAATTCCAGGACCTTTGCACTTGTGGTTTCTTCTGAGCAGGTCCAAGTGTGTGCCCGAGTGCCTGGGAGTGGTGGCATAGGGCCCTGGGTGTGAATTCTGCAGGGCAGGAGTGGGGAGTCACGAATATTAACCTGGTATGGTGGCACACACAAGCCATCTAGGGATGAAGAGGCCCAGGCAGTAGCATCCTAACCTAGTTCGGTAACAGACTGGGCTACTAGTGACACCATGTCTCAAATTAGAAAAGAGGGGCCCAGCATGAGTGATGGATGTTCCATCCCCTGCACGCCCCGCCCCCCACGCAAAATGGAAGTTTTCTCTTTAAGTGGGGGCCACCGAAGGTTCTGAGGGGAGAGGTGACCAGGTCCAAGTGTCCGGAACCGAGGATGGAGAGGGATTTGGGGTGTAAAATGATTCTGGTTGTTGTATGAACTGTGGTAAACGGACAATCTGCGCTGCGAGCTGCAGCCCAGCTCTGTTGTGGAGTACAACCGTAGGAAGTGACGCCCAGGGATCAATACTTTAGCTCTCCTTGGCTACCTTGGAGCTTTGGGACCCGTCTAGGCTAAAACAGTAGTCTCTTTCCTCTTCACTGCAG
Seq C2 exon
GTGACGGCCATGGGGACCGCCAGGCTACGCAAGCTGCAACTGCTGCTTCTGCTGGGCGCTTGGAGGGCGCTCGGAGGTGCCGCGCGTTGCCGCGTCACCCTAGTTTTGTCCCCGCAGAAGGCAACTAGCGCCGTCTGCAGGAGCTCAGAAGCCACCCAAGACAGCGAACTGGCCACGCTGCGCATGCGCCTGGGTCGCCACGAGGAGCTGCTGCGCGCGCTGCAAAGGCGTGCGGCGGAGGGTGGTGCGCTCGCGGACGAGGTGCGCGCACTGCGCGAGCACAGTCTCACCCTGAACACGCGCCTGGGCCAGCTGCGCGCGCAATTGCAGCAGGAGGCGAGGGCGGAGCCTGACCTGGGGGCGGAGCCTGCTGCTGCACTTGGTTTGCTAGCCGAGCGCGCGCTGGACGCTGAGGCCGAAGCGCGCCGGACGACGGCACGCCTGCAGCAGCTGGACGCACAGCTCCGTGAGCATGCGCAGCTCATGAGCCAGCATAGCAGCCTCCTCGGCCGCCTGCAACGCGCGTGCGCGGGCCCGGAACGGGGACAGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038742-Angptl6:NM_145154:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.341
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATTGCCGCAAACCTCACTG
R:
CGTGTTCAGGGTGAGACTGTG
Band lengths:
345-1344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: