HsaINT0008028 @ hg19
Intron Retention
Gene
ENSG00000171819 | ANGPTL7
Description
angiopoietin-like 7 [Source:HGNC Symbol;Acc:24078]
Coordinates
chr1:11254518-11256038:+
Coord C1 exon
chr1:11254518-11254716
Coord A exon
chr1:11254717-11254910
Coord C2 exon
chr1:11254911-11256038
Length
194 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
GGGTCTGTTTCTCATGCCAGGTG
3' ss Score
8.93
Exon sequences
Seq C1 exon
GACTGGGAGGGCAACCTGCGCTACGCTGAGTATAGCCACTTTGTTTTGGGCAATGAACTCAACAGCTATCGCCTCTTCCTGGGGAACTACACTGGCAATGTGGGGAACGACGCCCTCCAGTATCATAACAACACAGCCTTCAGCACCAAGGACAAGGACAATGACAACTGCTTGGACAAGTGTGCACAGCTCCGCAAAG
Seq A exon
GTGAGATTTGGGGGGACCGGAAAGGAGAAGTTCAGGTACAAGCTCATAATCCCACTTGAGGAGAAAGAGTGAATTATAACTGTACAGTTGATATTCCGGTTTTGGTATTCTTTCTGACCCTGGCTCTAACTCCTTACCTGATGTCTGGTCTATCACAGTCAACTTACTAGCACTGGGTCTGTTTCTCATGCCAG
Seq C2 exon
GTGGCTACTGGTACAACTGCTGCACAGACTCCAACCTCAATGGAGTGTACTACCGCCTGGGTGAGCACAATAAGCACCTGGATGGCATCACCTGGTATGGCTGGCATGGATCTACCTACTCCCTCAAACGGGTGGAGATGAAAATCCGCCCAGAAGACTTCAAGCCTTAAAAGGAGGCTGCCGTGGAGCACGGATACAGAAACTGAGACACGTGGAGACTGGATGAGGGCAGATGAGGACAGGAAGAGAGTGTTAGAAAGGGTAGGACTGAGAAACAGCCTATAATCTCCAAAGAAAGAATAAGTCTCCAAGGAGCACAAAAAAATCATATGTACCAAGGATGTTACAGTAAACAGGATGAACTATTTAAACCCACTGGGTCCTGCCACATCCTTCTCAAGGTGGTAGACTGAGTGGGGTCTCTCTGCCCAAGATCCCTGACATAGCAGTAGCTTGTCTTTTCCACATGATTTGTCTGTGAAAGAAAATAATTTTGAGATCGTTTTATCTATTTTCTCTACGGCTTAGGCTATGTGAGGGCAAAACACAAATCCCTTTGCTAAAAAGAACCATATTATTTTGATTCTCAAAGGATAGGCCTTTGAGTGTTAGAGAAAGGAGTGAAGGAGGCAGGTGGGAAATGGTATTTCTATTTTTAAATCCAGTGAAATTATCTTGAGTCTACACATTATTTTTAAAACACAAAAATTGTTCGGCTGGAACTGACCCAGGCTGGACTTGCGGGGAGGAAACTCCAGGGCACTGCATCTGGCGATCAGACTCTGAGCACTGCCCCTGCTCGCCTTGGTCATGTACAGCACTGAAAGGAATGAAGCACCAGCAGGAGGTGGACAGAGTCTCTCATGGATGCCGGCACAAAACTGCCTTAAAATATTCATAGTTAATACAGGTATATCTATTTTTATTTACTTTGTAAGAAACAAGCTCAAGGAGCTTCCTTTTAAATTTTGTCTGTAGGAAATGGTTGAAAACTGAAGGTAGATGGTGTTATAGTTAATAATAAATGCTGTAAATAAGCATCTCACTTTGTAAAAATAAAATATTGTGGTTTTGTTTTAAACATTCAACGTTTCTTTTCCTTCTACAATAAACACTTTCAAAATGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171819-ANGPTL7:NM_021146:4
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(30.6=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=PD(23.6=89.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATCGCCTCTTCCTGGGGAA
R:
AGGTAGATCCATGCCAGCCAT
Band lengths:
251-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)