MmuINT0015043 @ mm9
Intron Retention
Gene
ENSMUSG00000028989 | Angptl7
Description
angiopoietin-like 7 [Source:MGI Symbol;Acc:MGI:3605801]
Coordinates
chr4:147869389-147870800:-
Coord C1 exon
chr4:147870602-147870800
Coord A exon
chr4:147870434-147870601
Coord C2 exon
chr4:147869389-147870433
Length
168 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TCATCTGTCTCTCATGCCAGGTG
3' ss Score
11.42
Exon sequences
Seq C1 exon
GACTGGGAGGGCAATGCACGCTACGCAGAGTATAGCTACTTTGCGTTGGGCAATGAACTGAACAGCTACCGCCTCTTCCTGGGGAACTACAGTGGCAACGTGGGGAAGGACGCCCTCCTCTACCATAACAACACCGTCTTCAGCACCAAGGACAAGGACAACGACAACTGCTTGGACAAGTGCGCACAGCTCCGAAAAG
Seq A exon
GTGAGACCTGGGCGGCAGGGAGGGCTGGGCCCACTAAGGACAGCAGTGAGCTACAGATCTGTTGCTGCTGCTCTGGCCGTGCTGTCCCCTTCGCTTTAAGGCCACCCATCAGCCCTAGTCTAGGGAGGACGTCCCCAGCCTACTAGCCTCATCTGTCTCTCATGCCAG
Seq C2 exon
GTGGCTACTGGTACAACTGCTGCACAGACTCCAACCTCAATGGGGTGTACTACCGCCTTGGCGAGCACCGAAAGCACATGGATGGCATCAGCTGGTATGGCTGGCATGGAGCCAACTATTCCCTCAAACGTGTGGAAATGAAGATCCGCCCAGAAGCCTTCAAGCCCTGAGAGAAGGCAGACACTGAGGAGGGAGAACAGCATGGGAGGAGGAGGTGGACACAGGGTAGGAGGGAACAGTTTATCATCCAGGAGCACAATATAACTTTACCTGTGTGAGCACACACACACAATAGAACCACACGTGCCAACAGTGCACACTAGCAGATGGAGCCAGGCGGACCCAGTGGGGCCTGCCACGGTGCCTCACGGGAGAACTCATGGACAACGGTAACCCTGAGGTCACTTAACCCATTTTCCCTAACTGAGGCTTAGATGACACGAGGGAAAAGAACAAATAAAAACCTGGTGTGATTCTCAGCGGAGAGGCTGTGAGAAATGAAAGAAAGCAGGTGGTGGAGAAGGGGCTTCCAAGTCTTACCCCGCGACACTTCCTTGTGTCTATAGTATTTGTTTTGTTTTTCTTTTTGAGACAGGGTCTCTCTACACAGCTCTTTCTGTCCTGGAACTCACTATGTAGACCAGGCTGACCTTGAACTCACAGAGATCTACCTGCTTCTGCCTCCCAAGTACAGGGATTAAAGGCATGTACCACCATACCCAGTATATATAATTTTTAAGACACAAAAAACATGGAGATAGAGAGCAGCTGCCCAGGTGTCTCCGGGGGGGCCTTGTTGTCAGAGTCCTGGGGGAGAGAGGAGCACTGGACAACATGCTGCGGGTCTGACGTGGCGAGAACACCAGCCGGAGGTGAGCACAGACTCTGGGTGATCACAATACTGCCTTCAAACATCCTCAGTCAAAAACCAAAAGATCCCCTTTAATAAAAATGCTTGGAAAATGAAGGTAGATGGCGCTGTGGTTTAAAACTTGTGATGTATATAGAAGCATCTTCCTTGTAAAAATAAAATATTGTAATTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028989-Angptl7:NM_001039554:4
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(30.6=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=PD(23.6=89.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTGAACAGCTACCGCCTC
R:
CCATACCAGCTGATGCCATCC
Band lengths:
245-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: