RnoINT0017338 @ rn6
Intron Retention
Gene
ENSRNOG00000009589 | Angptl7
Description
angiopoietin like 7 [Source:RGD Symbol;Acc:7553363]
Coordinates
chr5:165312130-165312860:-
Coord C1 exon
chr5:165312662-165312860
Coord A exon
chr5:165312499-165312661
Coord C2 exon
chr5:165312130-165312498
Length
163 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
CTAGCTGTGTCTCACGCCAGGTG
3' ss Score
8.3
Exon sequences
Seq C1 exon
GACTGGGAGGGCAACGCACGCTACGCAGAGTACAGCTACTTTGCGTTGGGCAATGAACTGAACAGCTACCGCCTCTTCCTGGGGAACTACAGTGGCAACGTGGGGAAGGACGCTCTCCTCTATCATAACAACACCGTCTTCAGCACCAAGGACAAGGACAATGACAACTGCTTGGACAAGTGTGCACAGCTCCGAAAAG
Seq A exon
GTGAGACCTGGGAGGCAGGGGAGGGCTGGGTCCACTAAGGACAGCAGTGAGCTGTAGATTTGCTGCAGGTGCTCTGGCTGTGCTGTCTCCTTTGCTTTAACGCCATCAATCAGCCAGAATCTAGGGAGGGCATCCCCAGCCTACTAGCTGTGTCTCACGCCAG
Seq C2 exon
GTGGCTACTGGTACAACTGCTGCACAGACTCCAACCTCAATGGGGTGTACTACCGCCTGGGGGAGCACCGGAAGCACATGGATGGCATCAGCTGGTATGGCTGGCATGGAGCCAACTATTCCCTCAAACGGGTGGAGATGAAGATCCGTCCAGAAGCCTTCACGCCCTAGGAGAAGGTTGCTGCAGAGCTATGTGAGGCGGAGGCTGAGGAGGGAGAGCAGGATGGGAAGAGGGTGGACAAAAGGTAGGAAGGGGACAGTTTATCATCCAGGAGCGTGACACAACTTCACCTGTGCACACAAGAGCACATGCACACACAACAGAACCACACAGACCAAACAGTGCACATTAGCAGATGGCACCAGGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009589:ENSRNOT00000012726:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(30.6=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=PD(23.6=89.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTTGGGCAATGAACTGAAC
R:
TGATGCCATCCATGTGCTTCC
Band lengths:
247-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]