HsaINT0008164 @ hg19
Intron Retention
Gene
ENSG00000151150 | ANK3
Description
ankyrin 3, node of Ranvier (ankyrin G) [Source:HGNC Symbol;Acc:494]
Coordinates
chr10:61827693-61836206:-
Coord C1 exon
chr10:61828395-61836206
Coord A exon
chr10:61827768-61828394
Coord C2 exon
chr10:61827693-61827767
Length
627 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
3' ss Seq
TAAGAAATTGTAAATCGTAGGTC
3' ss Score
3.04
Exon sequences
Seq C1 exon
TTGAACGGAGTACAGGAGCAACAAGATCCCTCCCCACCACTTACTCATACAAGCCATTCTTTTCTACAAGACCATACCAGTCCTGGACAACAGCTCCGATTACAGTGCCTGGGCCAGCCAAGTCAGGCTTCACTTCCTTATCAAGTTCTTCCTCTAATACGCCATCAGCTTCTCCGTTAAAATCAATATGGTCTGTTTCGACACCTTCTCCAATCAAATCCACATTAGGCGCGTCAACTACATCTTCAGTTAAATCCATTAGTGACGTGGCATCTCCAATTAGATCCTTTCGGACAATGTCTTCGCCGATAAAAACTGTGGTGTCACAATCTCCATACAATATCCAAGTTTCCTCTGGTACCCTGGCTAGAGCTCCAGCAGTCACGGAAGCTACGCCCTTAAAAGGGCTGGCATCCAATTCTACGTTTTCCTCTCGAACCTCTCCAGTGACTACAGCAGGGTCTCTTTTGGAGAGGTCATCAATTACTATGACACCCCCTGCCTCCCCCAAATCAAACATTAATATGTATTCCTCAAGTTTGCCATTTAAGTCAATTATTACATCAGCAGCACCGCTAATATCTTCACCTTTAAAGTCAGTGGTGTCTCCAGTTAAATCAGCAGTTGATGTCATTTCATCAGCCAAAATTACAATGGCATCTTCTCTCTCATCACCTGTGAAGCAGATGCCTGGACATGCAGAGGTAGCATTAGTCAATGGATCTATTTCCCCTCTAAAATATCCATCATCCTCAACTTTAATTAATGGATGCAAAGCCACTGCCACGTTACAGGAAAAAATTTCTTCTGCTACAAACTCTGTGAGCTCTGTGGTCAGTGCAGCCACTGACACAGTTGAGAAAGTGTTTTCTACCACGACTGCAATGCCATTTTCCCCACTCAGGTCATATGTTTCTGCAGCACCATCAGCTTTTCAGTCTCTAAGAACTCCTTCCGCAAGTGCACTCTATACATCCCTTGGGTCGTCAATATCTGCAACTACCTCATCTGTAACTTCATCAATTATAACAGTGCCAGTATACTCTGTAGTCAATGTTTTGCCAGAACCAGCATTAAAGAAACTTCCAGACTCTAATTCATTTACAAAATCAGCAGCAGCCTTGCTGTCACCCATTAAAACATTGACTACGGAGACACATCCTCAGCCTCACTTCAGTCGAACTTCATCTCCAGTTAAGTCATCTTTGTTCCTTGCACCCTCTGCCCTTAAGTTGTCTACACCATCTTCTTTATCTTCCAGTCAGGAGATACTAAAAGATGTAGCTGAAATGAAAGAGGACCTAATGCGGATGACCGCAATACTACAGACAGATGTGCCTGAGGAGAAGCCATTCCAACCTGAACTCCCAAAGGAAGGGAGAATAGATGATGAAGAACCTTTCAAAATTGTAGAGAAAGTAAAGGAAGACTTAGTGAAAGTTAGTGAAATCCTTAAAAAGGATGTATGTGTAGATAATAAAGGATCACCCAAATCACCAAAGAGTGACAAAGGACACTCTCCTGAAGATGACTGGATAGAATTTAGTTCGGAAGAAATCCGGGAAGCCAGACAACAAGCTGCTGCGAGCCAGTCTCCATCTCTGCCAGAGAGAGTGCAAGTAAAAGCAAAAGCCGCCTCCGAAAAGGATTATAACTTGACCAAAGTTATTGATTACCTAACAAATGATATTGGGAGTAGTTCACTGACAAACTTAAAATACAAGTTTGAGGATGCAAAGAAGGATGGTGAGGAGAGACAGAAAAGAGTTTTAAAACCAGCAATTGCTTTGCAGGAACACAAACTCAAAATGCCTCCAGCCTCCATGAGGACTTCCACCTCTGAGAAAGAATTGTGTAAAATGGCTGATTCCTTTTTTGGAACAGATACTATTTTAGAGTCTCCTGATGACTTTTCTCAACACGACCAAGATAAAAGTCCCTTGTCTGACAGTGGCTTTGAAACAAGAAGTGAAAAGACACCTTCAGCCCCACAAAGCGCTGAAAGCACTGGTCCTAAACCACTTTTTCATGAAGTTCCCATCCCTCCTGTCATTACAGAAACAAGAACTGAAGTGGTTCATGTTATCAGGAGCTATGATCCCTCAGCTGGGGATGTTCCCCAGACCCAACCAGAGGAGCCTGTGTCACCTAAACCTTCACCTACTTTTATGGAATTGGAACCAAAGCCCACCACCTCTAGTATTAAAGAAAAGGTTAAAGCATTTCAAATGAAAGCCAGTAGTGAAGAAGATGACCACAATCGGGTTTTAAGCAAAGGCATGCGTGTTAAAGAAGAGACTCACATAACCACAACCACCAGAATGGTTTATCATTCTCCACCAGGCGGTGAAGGTGCATCTGAAAGAATTGAAGAAACCATGTCAGTCCATGACATCATGAAGGCCTTTCAGTCCGGGCGGGATCCTTCCAAAGAACTGGCAGGTCTGTTTGAACATAAGTCGGCAGTGTCTCCAGATGTTCACAAGTCTGCTGCTGAAACCTCAGCCCAGCATGCAGAGAAGGACAACCAAATGAAACCCAAACTGGAGCGTATAATAGAAGTCCACATCGAAAAAGGTAACCAAGCTGAGCCCACTGAAGTCATTATTAGAGAAACCAAAAAGCATCCAGAAAAAGAAATGTATGTATATCAGAAAGACTTATCCCGGGGAGATATTAACCTAAAAGATTTTCTGCCAGAAAAACACGATGCTTTTCCTTGTTCAGAGGAACAGGGTCAGCAAGAAGAAGAAGAACTTACTGCTGAAGAGTCATTGCCTTCTTATCTGGAGTCTTCCAGAGTAAACACTCCTGTGTCCCAAGAAGAAGATAGCCGCCCTAGTTCTGCTCAACTCATATCTGATGACTCTTATAAAACATTGAAGCTTTTGAGTCAACACTCAATAGAATACCATGACGATGAGTTGTCAGAACTAAGAGGGGAGTCTTACAGGTTTGCTGAGAAAATGCTTCTGTCAGAAAAGCTAGATGTGTCTCATTCTGATACTGAGGAATCGGTTACAGACCATGCAGGACCCCCTAGCTCAGAGTTACAGGGGTCTGATAAGCGGTCCAGAGAAAAAATAGCCACTGCCCCCAAAAAAGAAATTCTCTCCAAAATCTATAAAGATGTTTCTGAAAATGGTGTAGGTAAAGTGTCTAAAGATGAGCATTTTGATAAAGTGACAGTGTTGCACTATTCTGGCAATGTTAGTAGTCCAAAACATGCCATGTGGATGCGCTTTACTGAGGACAGATTAGACAGAGGTAGAGAGAAGTTGATATATGAAGATAGGGTGGACAGGACTGTGAAGGAGGCTGAAGAAAAACTGACTGAAGTGTCACAGTTTTTTCGTGACAAAACTGAAAAGCTAAATGATGAACTGCAGTCCCCAGAGAAAAAGGCACGCCCTAAAAATGGCAAAGAATATTCTTCTCAAAGCCCTACCAGTAGCAGCCCTGAGAAAGTGCTACTGACAGAACTGCTGGCATCCAATGATGAGTGGGTTAAGGCAAGACAGCATGGCCCTGATGGACAAGGCTTCCCCAAGGCCGAGGAGAAGGCACCCAGTCTGCCCAGCAGCCCAGAGAAGATGGTTCTCTCCCAACAGACTGAGGACAGCAAGTCCACAGTGGAAGCCAAAGGAAGTATTTCACAGAGCAAAGCACCAGATGGGCCCCAGTCTGGATTCCAGCTCAAACAATCTAAACTCAGTTCCATTAGATTAAAATTTGAACAAGGCACACACGCAAAAAGTAAGGACATGTCTCAAGAAGACAGAAAGTCAGATGGCCAGTCCAGAATCCCAGTTAAAAAAATACAGGAGAGCAAGCTACCCGTCTACCAAGTTTTTGCTAGAGAAAAACAGCAGAAGGCCATAGACCTCCCAGATGAAAGTGTATCTGTGCAAAAAGATTTTATGGTATTAAAAACCAAAGATGAGCATGCCCAAAGCAACGAAATTGTTGTAAATGATTCTGGCTCTGATAATGTGAAAAAACAGAGAACTGAAATGTCAAGTAAAGCAATGCCTGACTCTTTTTCTGAGCAGCAGGCTAAAGACTTGGCATGTCATATAACCTCAGATTTAGCAACTAGGGGACCATGGGACAAAAAGGTCTTTAGAACATGGGAGAGTTCGGGAGCCACTAACAATAAGTCTCAGAAAGAAAAACTTTCGCATGTACTTGTTCATGATGTAAGAGAGAATCACATTGGTCACCCTGAGAGTAAAAGTGTTGATCAAAAGAATGAATTTATGTCTGTGACTGAGAGAGAACGCAAATTGTTAACAAACGGCTCTCTCTCAGAAATTAAAGAAATGACTGTAAAATCTCCCTCCAAAAAAGTCTTATATAGGGAATATGTTGTGAAAGAAGGGGACCATCCAGGCGGATTGCTTGATCAGCCTTCCAGGAGGAGCGAGAGCTCAGCAGTGTCACACATTCCCGTCAGAGTTGCTGATGAGAGGAGAATGCTGTCTTCTAATATTCCCGATGGTTTTTGTGAACAGTCGGCATTTCCAAAACATGAACTATCACAAAAATTGTCCCAGTCAAGCATGAGTAAAGAGACAGTTGAGACACAGCACTTTAATTCTATAGAAGATGAAAAAGTTACCTATTCAGAAATCAGCAAAGTTTCCAAACACCAGAGTTATGTAGGTTTATGCCCACCTCTCGAGGAAACCGAAACCTCCCCCACCAAATCTCCTGATTCTTTAGAGTTTAGCCCAGGAAAGGAATCTCCCTCTAGTGATGTATTCGACCACAGTCCCATTGATGGATTGGAAAAACTCGCACCACTAGCCCAGACAGAGGGAGGGAAAGAGATAAAAACTTTACCCGTTTATGTCAGTTTTGTACAAGTGGGGAAGCAATATGAAAAGGAGATACAACAAGGAGGTGTAAAAAAAATCATAAGTCAGGAATGTAAGACAGTACAAGAAACCAGGGGGACCTTTTATACAACTAGACAGCAAAAGCAACCTCCTTCTCCCCAAGGTAGTCCAGAAGATGATACTCTAGAGCAAGTATCCTTTCTAGACAGCTCTGGGAAAAGCCCTTTAACCCCAGAAACACCCAGTTCAGAGGAAGTGAGTTATGAATTTACATCTAAGACACCTGACTCGCTCATAGCTTATATACCAGGCAAACCCAGCCCAATTCCCGAGGTTTCTGAGGAGTCAGAGGAGGAGGAACAGGCCAAGTCAACCTCCCTTAAGCAGACTACAGTGGAGGAAACAGCAGTTGAGCGTGAAATGCCTAATGACGTGAGCAAAGACTCTAACCAAAGACCCAAAAATAACAGAGTTGCCTATATTGAATTTCCCCCTCCTCCACCACTGGATGCGGACCAGATTGAGTCAGATAAGAAGCATCATTATCTCCCAGAAAAAGAGGTTGACATGATTGAAGTCAATCTGCAAGATGAGCATGACAAGTACCAGCTGGCTGAACCTGTCATTAGAGTGCAGCCACCTTCACCAGTTCCTCCCGGGGCAGACGTCAGTGATTCAAGCGATGACGAATCTATTTATCAGCCAGTCCCAGTTAAAAAATATACCTTCAAATTAAAGGAAGTGGACGATGAACAAAAAGAAAAACCCAAAGCTTCTGCTGAAAAGGCTTCCAACCAGAAAGAACTGGAAAGTAATGGATCTGGAAAAGATAATGAATTTGGCCTTGGCCTTGATTCACCTCAGAATGAAATTGCCCAGAATGGGAACAACGACCAGTCCATCACAGAGTGTTCCATTGCCACCACAGCAGAGTTTTCTCATGACACGGATGCCACAGAGATCGACTCTCTGGATGGCTATGACCTGCAAGATGAAGATGATGGCTTGACAGAGAGTGATTCTAAACTCCCAATTCAAGCCATGGAAATTAAGAAAGATATCTGGAACACAGAGGGCATTCTGAAGCCAGCTGACCGCTCTTTTAGCCAAAGTAAACTTGAAGTTATCGAGGAGGAGGGAAAGGTGGGACCAGATGAGGACAAGCCACCTTCTAAAAGTTCTTCATCTGAAAAGACTCCTGATAAGACTGATCAGAAGTCAGGGGCCCAGTTCTTCACACTGGAAGGCAGACATCCTGACAGATCAGTGTTTCCTGATACTTACTTCAGTTACAAAGTAGATGAAGAATTTGCCACTCCTTTTAAAACAGTAGCTACCAAAGGTCTAGATTTTGACCCTTGGTCTAATAACCGAGGGGATGATGAAGTTTTTGACAGTAAATCACGGGAAGATGAAACTAAGCCATTTGGGCTGGCGGTAGAAGACCGCTCTCCAGCAACAACCCCTGATACAACGCCAGCCAGAACGCCAACTGATGAAAGTACCCCAACTAGTGAGCCTAACCCCTTCCCATTTCATGAAGGAAAAATGTTTGAGATGACTCGCAGTGGTGCAATTGACATGAGCAAGAGGGATTTTGTTGAAGAGAGGCTCCAATTTTTCCAGATTGGTGAGCATACTTCTGAAGGGAAGTCAGGGGACCAGGGGGAAGGGGATAAAAGTATGGTCACTGCCACACCACAGCCACAGTCAGGGGACACCACTGTAGAAACCAATCTAGAGAGAAATGTAGAGACACCTACAGTGGAACCTAACCCCAGCATCCCGACCAGCGGAGAGTGTCAGGAAGGCACATCCAGTAGTGGCTCCCTGGAGAAATCAGCAGCAGCCACTAACACCTCTAAAGTTGACCCCAAGTTGCGCACGCCTATAAAAATGGGAATTTCTGCATCCACCATGACCATGAAGAAAGAAGGCCCTGGAGAAATAACAGATAAGATAGAAGCGGTGATGACCAGTTGTCAGGGATTAGAAAATGAAACTATAACAATGATTTCAAATACAGCCAATAGCCAGATGGGCGTTAGGCCCCATGAAAAACATGATTTTCAAAAAGATAACTTTAATAACAACAACAATTTGGATTCTTCCACTATACAGACAGATAACATTATGAGTAATATAGTTCTGACAGAACATTCTGCACCCACTTGTACCACAGAGAAAGATAACCCAGTGAAAGTCTCATCAGGAAAAAAGACAGGGGTACTACAAGGACACTGTGTAAGAGATAAGCAGAAAGTTCTTGGAGAACAGCAAAAAACAAAGGAATTGATAGGGATTAGGCAAAAATCCAAACTTCCCATAAAGGCCACTTCACCAAAAGATACCTTCCCACCGAACCATATGTCAAACACTAAAGCAAGTAAAATGAAGCAGGTTAGTCAATCCGAGAAAACCAAAGCCCTTACTACTTCTTCATGTGTAGATGTAAAGTCCAGAATTCCAGTGAAAAACACACACAGGGATAACATAATTGCAGTTAGAAAAGCATGTGCCACACAAAAGCAAGGGCAGCCAGAGAAAGGCAAGGCCAAACAGCTTCCATCCAAGTTGCCAGTAAAGGTAAGATCCACCTGTGTCACTACCACCACCACCACTGCCACCACCACCACCACTACCACCACTACCACCACCACCAGCTGCACAGTTAAAGTTAGGAAAAGTCAGCTCAAGGAAGTATGTAAACATTCCATTGAATATTTTAAGGGAATTAGTGGTGAGACCTTAAAGCTTGTGGACCGCCTCTCTGAAGAAGAAAAAAAGATGCAGTCCGAGTTGTCCGATGAGGAAGAAAGTACCTCAAGAAACACGTCGTTGTCCGAGACTTCCCGGGGTGGCCAGCCTTCGGTTACAACGAAGTCTGCTAGAGATAAGAAAACAGAGGCAGCACCTTTAAAATCAAAGAGTGAAAAGGCCGGCAGTGAGAAAAGGAGCAGTAGAAGGACTG
Seq A exon
GTGAGAATGAAGGCAGTCAGGTCTCTCGAGCACTCTGCTCACATCCTGGAGAACGAGCATAGTTTGTAAACACTTTCCAACTCGTAGACCCTAGTGCATGAACTGTTGTGATTGCCTGTGGAGTGACTTAACCGTAGTTTCTCATTATGTCATTGTCATCTGTATGTGCTGTCGTATATACTCTTCTTTCTGCCTTTTGATCAAACTACACGGTAGACAGCTAGGGAAGCATGCTGAAGATATTGGTGTCATTCAAGATGAACAACCTTCTTTTTTCTTTTTTAATGTGCTAATGGATATGATTCTGTCAAAGTAAAAGCACAGATGTTGAAATCCCATCATGGTGTTTTCACCAACACGACACTTCTGTAACTGTTTAAACTAGCTAGCTCGTCAGCATGTTCAATCCCATTACATTGAGCATCCATGTAGTCTGACATTTGGCCTGATGCAGGTGAAAAACAAGTGAGCCATGTGCAAAGAAGTGTTCATGTAGGTGACTAGGACACATTTCAGTGTACAGTGTTAGCATTAGTCTCTCTGTAAAATCTGCGTACTGCTAAAAGCAATTTTCCAGTATCGTATCTTTCTTGATGATTATTTTAATTAAGAAATTGTAAATCGTAG
Seq C2 exon
GTCCACAGAGTCCATGTGAACGGACAGATATCAGGATGGCAATAGTAGCCGATCACCTGGGACTTAGTTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151150-ANK3:NM_020987:37
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.712 A=NA C2=0.261
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0053117=Death=PU(19.0=61.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACCACCACTACCACCACCA
R:
CCGTTCACATGGACTCTGTGG
Band lengths:
356-983
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)