HsaINT0008517 @ hg38
Intron Retention
Gene
ENSG00000180071 | ANKRD18A
Description
ankyrin repeat domain 18A [Source:HGNC Symbol;Acc:HGNC:23643]
Coordinates
chr9:38571358-38575698:-
Coord C1 exon
chr9:38575476-38575698
Coord A exon
chr9:38572060-38575475
Coord C2 exon
chr9:38571358-38572059
Length
3416 bp
Sequences
Splice sites
5' ss Seq
GAGGTTAGT
5' ss Score
7.15
3' ss Seq
TCCTTTCTTTTTCTTTCCAGGTT
3' ss Score
12.65
Exon sequences
Seq C1 exon
ATCGGATAAGAAAATAGCAGTGATCAGCACCAAGCTCTTTACGGAGAAACAGCGGATGAAATATTTTCTCAGCACTCTTCCTACAAGGCCAGAACCAGAGTTACCTTGTGTTGAAAATCTTAATAGTATAGAACTCAACAGAAAATATATTCCCAAAACGGCCATAAGAATTCCTACTTCAAACCCACAGACTTCAAATAACTGCAAGAACTTCTTGACTGAG
Seq A exon
GTTAGTTATATGACCATTTCTCTTTTGGGTTTCATTTCTCTAATATAATTCTTGTCTATAATTTGATGAAATACTGAGTTCTGTTGACTTACGCATGTTAAGTAAAGATTATAATTAGCTGTGTTAACACAGAAAGGAAATGGAAACTTTACATTTTTTAATTCCCTGGAGCTCTCATTTTCAAGAGACACCCATTTGCTAACTTTATTCAATAAATGTGGTTAAACTGACACATTTAAAATTTCTTTAAAAGCTGCATTTAAGTTAGGTTTTAGAAAATGCATGTTATTGCCTAATAACTGATGGTATACTTTGAAATGCTTTGTCTTACTCTACTTGATTGTAGTTTGTCTGTGGTTCATATCACTTTTTTTTTTTTTTTGAGATGGTGTCTTGCTCTGTTGCCTAGGCTAGAGTGCAGTGGCATGATCTCAGCTCATTGCAACCTCTGCCTCCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGTGTCTGCCACCACACCTGGCTAATTTTTGTATTTTTAGTAGAGATGGGATTTCACCATATTGGCCAGGCAGGTCTCGAACTCTTGACCTTGTTATCCACCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGGGTGAGCCTCTGTGCCCAGCCCATACCACTTTTAAAGTTTCTTTGCACCAACTTAACTCTTTCCACCCATAATCACAAGTGAATGACAGGCAACCAAACACTTAACAACATATAGATATTTATTATTTAATAGAACCCCAAATAAGTGCATTTTATGAATTAAATAAACAAAACACTGAAAGGTTCATTTCCATTTTTCTGTTAAAAGCTTTGTGCTTGGCCAGGTGTGGTGGCTCACACCTGTAATCCCAGCATTTTGGGAGGCCGAGGCAGGCGGATCACCTGAGGACAGGAGTTTGATACCAGCCTGGCCAACATGATGAAACCCCGTCTCTACTAAAACTACAAAAATTAGCCAGGTGTGGTGGCAGGCACCTGTAATCCCACATGCAGCAACCCCATTACTATACTAGGGTTATACCTAAAGGAAAATATAAATCATTGTAACAAAAAGATGCATGCACATGTATGTTCATTGCAGCACTATTCACAATAGCAAAGACATGGAGTCAATCCAGGTGCACCCAAGGTAGTTTGAAAATCCAAGGTAGATTGGAAAATTCCATATATACCAAATACTATGCAGCCATGAAAAGAATAAAATCATGTCCTTTGCAGCAACATGGATACAGCTGGAATCCACTATCCTAAGGAAACTAACGCAGAAACAGAAACCAAATATCTTGTTTGCTCTCATATGTGGGAGCTACACATCAGGTGCCCATTGACATAAACATGGGAACAATAGACACTGGGAAATAAGAATGGGGAGGGACAGAGTGGGCCAGGGTTGAAAAACTGCTTCTTGGGTCCTATGCTCACTACCTGTGTGATGGGTTCAATTGTACTCCAAACCTTAGCATTCCTCAATATACTTTTGGAAGAAACTTACACAGGTACCGCTTTAATTTAGAATACAAACTAGAAAAAAAAAAGAAAACTTTACATATTTTTTTCAGTAACTAAAGAATATAAATTTCTTTTTAAGAAAAAATTTATTTAAGTAAAAAATGGATTAAACTTTTGTAAAGGACAGAGTTTTGCTAAGAATTTCAAAGCAATGCATTCATTCATTGCAAAATGTGACTTTAATTGTTTAACCTTTTTTTTTTCTTTTTTTTGAGATGGAGTTTCGCTCTGTCACTAGGCTGGAGTGCCGTGGCACGATCTCGGCTCACTGCAACCTCCACCTCCTGGGTTCAAGCCATTTTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTAGAGGCATGCACCACCACACCCAGCTAATTTTTGTATTTTTAGTAGAGATAGGGTTTCATCATGTTGGCCAGGATGGTCTCGATCTCTTGACTTTGTGATCTGCCCACATTTGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCTGCTGTGCCCGGCCATTGTTTAACCTTTGTACAAATAAAACACCACCTTTCTAAAATTATGTATATCCAATAGACCAATATTATCTATTTTTGTCAGATTACTCTAAATAGCATTACACAGATACATCCTCTATTATCTAAACTTAGAATAAGTAGAAATTTTACTTTACTTAATGTGATTAATTTTCTATTTAAGCAAACTTTGTGTTATGTCTAGTCACTAAAAATACTAAGGGCCACATTTTGTAATATATTAATCTCATGATAATATTTCTTGTTTAACTTAAACATTATTATTATTATTATTTACTTATTTTAGATGGAGCTGGACCGTGTAGAACAAATAATTACAGGAACAAAGAAAAGTATGTTGCCAAAATGTATTAATTAAATTTAGGTTTATTTTAGTAATAAAGTGTAAATAGCAAATGGCATTCCTTTTCATTGTTGGGTTAGTAGATACTATATTCAGTATCTTTTTCTTACACACATCTAATGAAAGATGTGAAAACGAAAACTTTCACAGTGAAGAGTATACTTATGCATCATTAATTCATCATGTTCCATAGCTTAAAAAATTCCCAAGAAGTGGATCCATCTCTTTTTTACCAGCTCTACAATTTGTTCACTTTTGCCATCCTCATGGAACTGTCAGCCAGCACACTGAAACGATTCTCCAAAAACAAAGGCATCAGTTGGCTTACATCTGTTCTCAGGAAAAGTTCCAAAAATTTCACCATGAAATAAAAACACTCACATCAATGTAACTCTTGTCAGGTTACTCAGCCTTGTCTCTCACCACTTACTGCATTCTGCCCTTTGCTCTAGCACCAAAGTGGACAGAATAGAGCTCCGCAGGGCTCTTTGTTACCTCAGGATCTTTGCCTTCGCCTCTTCCCTCTATCTGGCAAGATTTTCCTCGTCCTTCAGTCATCAACCTATGTATCCCCTCCACCAGAAAGCCCATGATATTGACACAAAAGTGGGATAGATGTCCCTTCTGTATGTTCCAGTAGTGCCCTGCTGTATACCTGTCATGGTATCTATGACTCTATATGGACATTACCTGCCGGTCTTTTAGGTTATAGCATATGACTATTGGGAGGTGGACCATGCCATCTTCATCTTGTAATTCCAGTGCTGGCTCTAGTACCTTAGCACGTGGCTGTTGAGTACATGAATGAAGAATGAAAAAGCTGTGATATTTAACCACAATTGGAATTAACGCCATGTGTAAATGATTTAATAGTAATTTTGTATTGTAATTGCACGTACATATTTCTCATTCTTATTAACTCTGATAACGTTCTCAACTCCACATTTTAAACTTACACTTCGTTAACTGAAATGTTTTAGGTAAAGAACATAATCCTTTCTTTTTCTTTCCAG
Seq C2 exon
GTTTTGCTATGTTGAGCACTTGCTCCCGTCTACTTTCTTTTGTAGAATCCACTGGTAAGCCACATCTAATGAAGAGATTAACCATAAAATCTTAAGGAAAAGTTGTATGATTTAAAAGATCATAAAACTTTATTACTGGGCTATTTACATGAAATTTTAATTGTTTCTCATATAATATAAAACATCATAATCTTTACTAAAGTAGAATATTTTCATGTCACATATGGTGTATATTTATATGTTATTTTAAATGATGTTTTTTAGCCTCCTTAAGTTTTAAGTGGATCTTGCAAATGAACACCAGCGTTATTGAGTTTGGCCTACTCAAATTGCCTGAATGTCAGCTGTTTAAACAGCCAAACAACCAAGTCATCATTGATACTTTAGTAAAGGTCATCGAGGGCTTCTTTGCATTTTACAGTTTTTATTACCATATGTAGTAGGAGACTTAAAGAGTATCTGCCAGGTTTGTCCATACTAGTGTTACGGTTTTCTTCTTGTAGCTCAATAGTATTTTGTGTGGAGATACTTTGAAGCTCTGTAAATATCTGGTTACTCCTCAAAACCCACTAGATTTAGCATTTCATGGATGACTTGTGTTTGAACAAGTATTACTGTGATGGTTGCCAGATGATTGTTTTTCTTATTTTCTTCTTTGTTCTACATGGAGAAATAAAACCAATAAATAAAGGAGAAGGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000180071:ENST00000399703:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.147 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0003816=Filament=PD(8.4=32.0),PF120013=DUF3496=PD(52.3=76.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains