RnoINT0017765 @ rn6
Intron Retention
Gene
ENSRNOG00000006717 | Ankrd26
Description
ankyrin repeat domain 26 [Source:RGD Symbol;Acc:1310736]
Coordinates
chr4:150550152-150551040:-
Coord C1 exon
chr4:150550812-150551040
Coord A exon
chr4:150550198-150550811
Coord C2 exon
chr4:150550152-150550197
Length
614 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
3' ss Seq
AAATATTCATCTCGTTTCAGATG
3' ss Score
7.7
Exon sequences
Seq C1 exon
GACTACTGAGAGGCTGGAGGAGACCAGCACCAAGCTGCTCCTGGAGGAGCAGCAGAACAGGTCTCTGCTGAGCTCTCTCAGTACGAGGCCTGTTGTAGAGTGTCCCTGTGTTGGAAAGCTTCATAATAGTTTGGTATTAAACAGAACTCTTATTCCAAGAGAAAGCCTAGCGGTTCCTACCTCAGGCCTACAGCCATCAAATAAAAGAGTGGAGATCTTCCTGACCAAG
Seq A exon
GTTAGTATATTTCTCTTTTCCTTCGGCTTTCAAGTTTCTGATAAAATTCTCACTTTTAATTAATCCATGGCACTGGTTCATTTTAATTTAATTTAATTTAATACATGACACTGGTTCATTTTGTTGGCCAATGCACACCATCACAGTGACTTATGCCAAAGGAGGAAAATTATTAAAGTTTCTGGAGTTCTCACTTCAGTAGGTACTCACTGTTGCTTGGTCTGGCAACGGTACCTTTCTTCAGAAGCTGTGCTTAGGTTGCAGTGTGTAAGGTAACTGTGGCTGCGACTGAAGGTGTAGCCTGAAACGTCACGGCAGTCTCCAAAGGCAGTTTTCCTGCAGCATCTCAAGGGTTCCAGTCTAGCGACAAGAGATGGCTGGCATCCAGACACCTACATGGAGATGTGTGTCATTTAGAGGAATCTAGCACTAATACTGTTATTAAGAAAGTAAATGTATTGGGTTTGGGGCTTTAGCTCCGTGGTAGAAAGGCCCTGTGTTCTGCCCTCAGGTCCAGAAAAAAAAAAGATAAATATGTAGCATTGCATAAGGCTAATTTCTGAGTTAAAAACTTTCCATTTTCTTAACCATTATAAATATTCATCTCGTTTCAG
Seq C2 exon
ATGCATCAAGAGTTGGAAAAAAGTATAAATAGAGAACTTAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006717:ENSRNOT00000073562:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.182 A=NA C2=0.188
Domain overlap (PFAM):
C1:
PF120013=DUF3496=PD(52.3=75.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]