GgaINT0109022 @ galGal3
Intron Retention
Description
NA
Coordinates
chr1:26133002-26135544:+
Coord C1 exon
chr1:26133002-26133248
Coord A exon
chr1:26133249-26135498
Coord C2 exon
chr1:26135499-26135544
Length
2250 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
TGTGTTATGTATAATTCTAGATA
3' ss Score
7.03
Exon sequences
Seq C1 exon
AGCCAATGAGAGACTAGCAGAAGCCAATGCTAAGCTCCTTCAGGAGCGCCACAGAAGCAAATCTTTAATTGCAAGTAGCATTGTCACTGGAGGTCTGTCTGCAAGTCCAGTTCTGTATTCAACTGAACTGGGACATCTTGGCAACAATTTGGCACTGAACAGAAGTCTCAGCCTAGGAGGAAGCTTCCTAGGCACAGCTGGGAATGCGTTATCATCAAGAAACAAGGTTGAAGCCTACATGGCTAAG
Seq A exon
GTAAGCATAGTGAAATACTTTTCAGTGGTGAAGACTTCTGGTCATTAAGATTGTACAGAATTACAAGAGTGCTCAGACACCAAAAATACTGGCATCTAAACAATGAACTAACTATAAATATACGTAACTATATACATATATAAGTCTTTTGTGTTTTTTCTTTTTTTAATAAGAGAAAATTTAATAAGCAGTGCTGTGGCATTGGAAGTTCCCAGCTAAGCTATTTATACACATACTATACATTAAGAGTTAAATAAGTGTATGACATACATAAAATGAATAACTTCGACATCTTTGCCTATCTGACATCTCTGGTCATTCCACTTTTTCTTTCCTTACTGATCTTCATTTTTACTTCCTTTTAGTACATTAATACTAACAAAGACATGCTTCAAAACTAGGATGATATGATTGCTTTGCTTCTTACTATACAGTCTATTGTGGGTTGCATGCTGTGCCTAGGAAACATTTCTCTTTGTGCTTTCTGCTATGTATTATTACCTGAGAAAAGAACAGCCTACTGTTCAGGAAGCCTTCACACCTTTCTAATATTTTGCAGCAATTGGTATATGATTGCAACCTCTTCAATAGCTCTGAGGTACTTTACCAGTTGTACTGCTTAGTACTTTGCCTGTTCACCAGACTACTTAAAAAGACAAGAGTTTATCTGACTCTGAGCCTTTTCTTTGCTTCATTATACCTCAGATTTTTCAATAACCTGTTCCATTCTATTGGGGGAAAAAAAAAGAACAAATGAAAAAACACCTCTGTATTGCCATTAAATTCAAGCTAAGTGCTGCCTTCTTGGATGGAGGAGATTACAAGTACTCCTGACAGTAAAGCTCATAATGACAGGGAGTTAAGGAGCTTAAATTGCAGTTTGCCTCACGTAGTCATCTTGCACTTGTGTTTTTATTTAAAGCTCTCTGTGCACATTTGGTGTTTTTCAAAGGGAGGTTATATGAAATAGGGTGTATGCACCTCCTGGGAGGAGGAGGCTTGTGTAGATTTTGACTTTGATTTGTGCAAAAGCTTTGAAATAGCTTCAAGGACAAGAAGCTGAAAATACTTCACACTGCCATCATTCAAAATGCTGGTATCAATTATTTTGTCCATGCAACTGTTGAAGAACTGTGAAGAAACAAACTGTGCTGATTACAAACGAGAAAGAAATGCTGCTCTGAAAAGTGGGCACAGAAAATAATGGTGAGCTCTGCTAGCTGCAGCCTGTGTGAGTGCTTGGATTCATGAAACCAGTTTTCCTACTGGTAGCATAAGAAACGGAACACCTTCCCATTCCATCTCTCAGTTTCTGTTCCCTTTCTGACTTTATTTCCTGTCCGCACTCCTGTTTTGTAGCAGTCGTATGATTTTCCTCTCTTTTGACTTCTGCCTGCTGCTCTTGTTCTTTTACTTGGCACCACTGAGAAGAGTCAAGCTTTCTCGTCTTTATACTCCATCCCACAATCAGATAATTACACCCGTAGGTGAAACCCTGAGCCTTCTCTTCTCCAGGCTGAACAGTCCTGGTGCTCTCAGCCTCTCCACATAAGCCACGTGCTTCAAGCAGTTAACTGTATTTGCTAATGGCATGAGTCTGGAAGCTGTATGCTGTCTGTTTCGACAGTGACTTCTATGTGTTACAGACCTGATGGAAAATAATGCAGGAGACGCAAATATCATCAAATGTTAACAATAGCAGACAGTGTTTGGACTGTGGCCCTTTAAAAGGTCTGATTTCTCCTTATGAAGACTTTGCATTCAGAATAAATACCAGTAAATAAACAGCTCCTGGGAGAGCAAGGGGTAAATGCTCCTTTCTAGTGATCCAAGCTGGTTTCTGTTACATAATAAAATGTGCAGCACTTGCTTTGTAACCAAGTAAACAAGAAAGTGAACAAAGGAATAATGTGTTTTTATATTTTTATGTGTATTTGAAGGTAGACATTAACCATGTATACATTTTTATAAAACCACTGTGCTTTCTTCCTATATTTTTTATGATCCAGCTGGTGAATTATAGATTGTCCTGTGCTAAAGTTAATGCTGCTCAGCAATGAGAAGGCTACAGCCTCACTGATCAAGAGATTGTCGTCGTGAAAAATCAAACCCCAGACCAAGATGTCCCCATTTGGGATGGCGGTTTTGGTTTCTAACACACATTATGTGTGGGTTTAAAAGTTGTTTAAGAAGTTTAATGTTGCAAAAGTGGAACTTGAAATCTCAATTATGTGTTATGTATAATTCTAG
Seq C2 exon
ATACGGAAGGAACTGGATGAAAAAATCACTAAAGAACTTGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009104:ENSGALT00000014827:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.385 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF120013=DUF3496=PD(38.9=85.4)
A:
NA
C2:
PF120013=DUF3496=PD(10.0=56.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]