BtaINT0018336 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008288 | ANKRD26
Description
Bos taurus ankyrin repeat domain 26 (ANKRD26), mRNA. [Source:RefSeq mRNA;Acc:NM_001113767]
Coordinates
chr13:17908496-17911142:-
Coord C1 exon
chr13:17910914-17911142
Coord A exon
chr13:17908542-17910913
Coord C2 exon
chr13:17908496-17908541
Length
2372 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
3' ss Seq
TAATATTTGACTTATTTCAGATG
3' ss Score
7.27
Exon sequences
Seq C1 exon
GACTCATGAGAGGCTGGCGGTGATCAGCACCAAACTTGAGGTGGAGAAAGAGCAGAACAGATCTTTACTCAGCACTCTTAGCACGAGGCCAGTCCTGGAGCCCCCTTGTGTTGGAAATTTCAATAATCCTGTAGTGCTCAATGGAAATCTTACTCCAAGAGCAAACGTAGGTTTTTCTACCTCAATTCCACGCCCTTCGAATAACAGCATGGAGACTTACTTGACCAAG
Seq A exon
GTTAGTTCTATTATCTTTTTTCCACTGGGTTTCAGATTTCTGATATGAATGATCCTTGTTTTTAATTTGGTGAACTTCTGAGTTGTTTATTTGACTTAATGCACACAAAGTAAAAGTCATAATTAGCTGTGCTAATAAAGGAGACAGAAATTTTATGATTTTTTTGTCCCAGAGTTCATTTTAAGAGATACTTACTAAATTATTAAATTTCTTGAAAAGCTGTGTTTAAATTCTACTTAAGAAATGAAATCTTATTACCTAGTATCCAAAAGTATTCTTTCAGATGTTTCACTTCCTTTCTAATTGACTTCAGTTGGCAATGGTTCATAATCATTTCCACACTCTGCTGTATCCAATGAAGTTTTTCTGCCTCTAAGCATAAGTGAATCACTGGCATCTAAACACTAACCACATATGGATGCTTTTTGTTTAAAGGAATCCTAGATAAATCCTTTTTATGAATTAAGTAAACTTACAATACTAAACCAAAACATTAATTTCTAGTATTTGCTTAACATTTTTTGTCATTTTCTTACATTTTTTGTCATTTTCTTACATTTTGTCATTTCTTACAAAAATGACATTTTTGTCATTTTCTTTAATTGCTATTTTACCTATAGCATTTTTATTTAAAATTAAAAGAAAATCTTGCTGAGTATTTGTAGAATATTTCTAGATTTGTAGTTAATGCAAACATTTAAACATTATAAATGAAGCTCACTTTATCTCTATCTTGACATCACCTGGATGAATGGTATCTAAGATAGCAATGATGGGGAGTCTTTAAATTGCAACCAGTTTTTACTGTTTAATCATTGTGATTAAAATATCCATTTCAGTCAGTGCACACAGGTTTATGGTTTTGATGGTGTTTTCCTGATGTTTGTGGTGCACAGAGAAGTAGCCCTTGTTAAATGCAGTCTCAACCTGTTTTCTCATTTGGCTTCTTGCCATCGTAGGAGACCAAGTAAGGTTTCTTTGACAGCACTGCATCTACGTTGGGTCTTAGTACTTGAGAGCTGTGAAACTGGAGGACGTGCTTTAGCTGTGTGGTTACAGTGGGCCTCCGAACACTTCATCCCAAGTCAGACACTTCCCCACGCAGGCCTAAGAGGAGGAAGCAAATGCTTGACCCCTGTCCCAGGGGCAGGCTGCCTACTGTACACCCAAGTTCACGGTGCTGTGGGCACACTATTGGAGAAGTTCCTTCTCATAAGGAGGGTAGGAGTATAAGTCCTCACCTTGAGACTTTTCTCCTTCAAGTTCCCTGTTGAGTGTTTTTTAAAAAATTATGCTTTATAAATTAACTATATCAACTGACTGCTACATATAGGAGTTTGACAATAATTTAGTCTTGTTCTTGCCTTTAAAACATGATTTAGTTAGAAAGCTACTATGTCATGTCATGCCACAAGCATTATTGAACTATGTAAGGTTTTACATATTCATTTTCTCTGTTATAGTTAAAAATCTATGTGTTTTTTCTTAATTTAAGGAAGTAGCTGGCATAGGACTATGGACTCAGTAAGAAAGTCATTGGCTTTGTTACTTCTTTTGTAGAATTATGAACTTTGCCTAAAGCATGACTCTCATACCTTAAGTTTTTTTTTTTTCACCCAAAGAAAATAACCTTTAAAAAAAAAAACAACTTTTATGTGGAACCATATTATATAAAATGGAGACAAGTATAAAGCCTTTTAGCCAAAGGAGTGGCCAGAGGTCCTGCACTTGTGACTTCTCAGTTCCTCAACCCTGCAGTGACCCCTGTGGGACCTTCCCCTTCTATGGGACATAGTTCGGAAGCTAACAGTTATGTGTTAATCCTTCTCACTAAACACCTTTAGAATAAAACCTTGCTGGTACATTGTTTTCTTATGTATAATTTTCTCACCTTTCTGTGTTTTTGTTAAATGGAAAAGTTTAAAGAAAATTGCAGATGTGTTCTCCTTAATAACATTCAACTCAAACTACTTCCTCCATTTGAACAGGATCGTCACCTAGAAATCAAAATAAAGGTCTCAGAAGTATGTATTTAGGGCAGGAGCTGTTAGGGGGAGAAGATAGTAATCTTGTGGGTCATTCCTAGGATCATGGGTCATTCTCTAATTCTTTGAAATTATGTGTACTTGATATACTGATATTTATTGTACTTTTTATCAGATTAAATAACATTCCATATATATGTTCTCTGTTATTTATAAGCGGAATAAGTAGGAATGCATTTTCTTTTATGTGATTATTTTTCTACTTAAGTAATCTTCAAGTTAGGTCTAGGCTCTCAAAGTATTATTTAAATTTAGTAAGCTGTATAACATTCCTATGATAATATCTCTTGCTTAACTTAAAGATAAATAATATTTGACTTATTTCAG
Seq C2 exon
ATGCGGCAGGAGTTGGACAGGAGTATAACTAGAGAACTAAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008288:ENSBTAT00000022622:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.416 A=NA C2=0.219
Domain overlap (PFAM):
C1:
PF120013=DUF3496=PD(51.8=75.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development