HsaINT0008643 @ hg19
Intron Retention
Gene
ENSG00000107890 | ANKRD26
Description
ankyrin repeat domain 26 [Source:HGNC Symbol;Acc:29186]
Coordinates
chr10:27349274-27349469:-
Coord C1 exon
chr10:27349441-27349469
Coord A exon
chr10:27349347-27349440
Coord C2 exon
chr10:27349274-27349346
Length
94 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATA
5' ss Score
8.49
3' ss Seq
TTGTTTCAAAACCCATTCAGCCT
3' ss Score
2.82
Exon sequences
Seq C1 exon
AGTCTCCTGAGAGATATCTTCACTTGAAG
Seq A exon
GTAATAAGTTTTATATTTTTATCTTGAATTATTAAGTGCATATTGTATAAAGTATACATTATTTATTAATCATTTTGTTTCAAAACCCATTCAG
Seq C2 exon
CCTACCATTGAAATGAAAGATTCTGTTCCAAATAAAGCAGGAGGAATGAAGGATGTACAAACATCCAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107890-ANKRD26:NM_014915:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCTGAGAGATATCTTCACTTGA
R:
TTGTACATCCTTCATTCCTCCTGC
Band lengths:
87-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)