RnoINT0017745 @ rn6
Intron Retention
Gene
ENSRNOG00000006717 | Ankrd26
Description
ankyrin repeat domain 26 [Source:RGD Symbol;Acc:1310736]
Coordinates
chr4:150589526-150589716:-
Coord C1 exon
chr4:150589688-150589716
Coord A exon
chr4:150589605-150589687
Coord C2 exon
chr4:150589526-150589604
Length
83 bp
Sequences
Splice sites
5' ss Seq
AAGGTATAG
5' ss Score
7.98
3' ss Seq
CTGTTTTCAAACCCGTCCAGCCT
3' ss Score
4.23
Exon sequences
Seq C1 exon
AGGCCCCCAGGAGGTGTCCAATCATGAAG
Seq A exon
GTATAGTAATATTTCCTCGTGCGTTTTCACTACATGCCTTATGGAGAATACGTTTGTTGAATACTGTTTTCAAACCCGTCCAG
Seq C2 exon
CCTGCCGTGGAAAGGAGGGCTCCTGTTCTGAACAAATCAGAGACAGTGGGGATGAAGGATGTGCAGACTTTCAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006717:ENSRNOT00000073562:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAGGAGGTGTCCAATCAT
R:
TGGTTTGAAAGTCTGCACATCCT
Band lengths:
103-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]