MmuINT0015540 @ mm10
Intron Retention
Gene
ENSMUSG00000007827 | Ankrd26
Description
ankyrin repeat domain 26 [Source:MGI Symbol;Acc:MGI:1917887]
Coordinates
chr6:118539686-118539875:-
Coord C1 exon
chr6:118539847-118539875
Coord A exon
chr6:118539765-118539846
Coord C2 exon
chr6:118539686-118539764
Length
82 bp
Sequences
Splice sites
5' ss Seq
GAGGTATAG
5' ss Score
7.13
3' ss Seq
TTGTTTTCAAATCCATCCAGCCT
3' ss Score
4.93
Exon sequences
Seq C1 exon
AGGCCCCCAGGAAATATGCAATCATGGAG
Seq A exon
GTATAGTAATGTTTTTCATGAGTTTTTACTACATGTTATATGGAGTACACATTTGTTAAATATTGTTTTCAAATCCATCCAG
Seq C2 exon
CCTACCATCGAAAGGAGGGCTCCTGTTCTGAACAAAACGGAGACAGTGGGAATGACGGATGCACAGACTTTCAAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007827:ENSMUST00000112830:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.900 A=NA C2=0.870
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCCCCAGGAAATATGCAAT
R:
ACTTGAAAGTCTGTGCATCCGT
Band lengths:
104-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types