HsaINT0008649 @ hg19
Intron Retention
Gene
ENSG00000107890 | ANKRD26
Description
ankyrin repeat domain 26 [Source:HGNC Symbol;Acc:29186]
Coordinates
chr10:27382278-27382728:-
Coord C1 exon
chr10:27382614-27382728
Coord A exon
chr10:27382452-27382613
Coord C2 exon
chr10:27382278-27382451
Length
162 bp
Sequences
Splice sites
5' ss Seq
AAGGTATAT
5' ss Score
7.84
3' ss Seq
TCTTGGTCTAATACTCCCAGGCT
3' ss Score
3.8
Exon sequences
Seq C1 exon
GACGGCTCTACATTTGGCCTGTGCCAATGGTCATCCAGAAGTAGTAACTCTCCTGGTGGACAGAAAATGCCAGCTCAATGTCTGTGACAACGAAAACAGGACAGCTCTGATGAAG
Seq A exon
GTATATAGTAGCCAGCTCTTTCAGCATCAGATGGATTTGACTTAAATACATAGAATGAAAATGAATTTATCTCATTAAAATATAACTAATTGGTGAAACCTGTGGAGTGTTTATTTTGCATTCCTAGAATTTATGATCTGTTTCTTGGTCTAATACTCCCAG
Seq C2 exon
GCTGTACAATGCCAGGAAGAGAAATGTGCAACTATTCTGCTAGAACATGGTGCTGATCCAAATCTTGCGGATGTCCATGGCAACACTGCTCTTCACTATGCTGTCTATAATGAGGACATATCAGTAGCAACAAAGCTGCTTTTGTATGATGCAAATATTGAAGCAAAAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107890-ANKRD26:NM_014915:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF136371=Ank_4=PD(35.8=48.7),PF0115012=GDA1_CD39=FE(29.9=100),PF127962=Ank_2=PU(21.6=41.0)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(44.9=100),PF127962=Ank_2=PD(75.7=96.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGGCTCTACATTTGGCCTG
R:
GCAGCTTTGTTGCTACTGATATGT
Band lengths:
254-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)