DreINT0001019 @ danRer10
Intron Retention
Gene
ENSDARG00000099768 | ANKRD7
Description
ankyrin repeat domain 7 [Source:HGNC Symbol;Acc:HGNC:18588]
Coordinates
chr25:3515375-3516217:-
Coord C1 exon
chr25:3516103-3516217
Coord A exon
chr25:3515549-3516102
Coord C2 exon
chr25:3515375-3515548
Length
554 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
3' ss Seq
TGTGTGTGTGTGTCTCGCAGGCG
3' ss Score
11.43
Exon sequences
Seq C1 exon
AACTGCGCTGCATATCGCTTGTGCCTGTGGACACACGGACGTGGTACAGTACTTGGTGGAGAGCAAAGTGAAGCTCAACTTATGTGACAATCAGAACCGCTCCGCCTTAATGAAG
Seq A exon
GTAAACTTAGACTGTCCTTATGAAATGATGAAAATCATATTCAGTGCGCATGCAGCATAAATGAGTACACCCATCACAGATCTCTCTTTTACATTAATATTTTCTGTAGGATGCTTTACAGTAATATATTTGTGGATATGCATTAGATTAGTCGGTACCAAAGCCAAAACTACAACGAATCTAACAAAAAAAAAACATAAGAACAGAATCCAAAAGTTACTACACACAAATATAGTTTGAGAAAATAGATTAAACAAGATTTAAAGAAACAGTAAAAATCAAGAGAAACCCCAAAAAATTAATTTAAATGCATTATCTTTTTATTCCTTAAGATCTTAGGTGACCAAACTCATGTTTTAATGGACGTAAATGTTTAATAAAACTGTTTTCTTTAAATAAACCAAAAATGATTGGCTATATTTAGTGAGAAATGGATAAAATATTCATTTTCAAAAGGGGAATAATTATGCTGAGCACTGTAAATATGAACACATGCTGACTGGTGATGTTTATGTATGCATGCGTGTATGTATGTGTGTGTGTGTGTCTCGCAG
Seq C2 exon
GCGGTTCAGTGTGAACAAGATCGCTCCGTCTCTTTGCTCCTGGAACACGAGGCCGATCCAAACCTGGTGGACATCAATGGAAACACAGCATTACACCTGTCTGCCCGCATCCCTTCTTTACCCGTAGCACTACAGCTCCTGGAGCACTCAGCCAACATCGACGCACAAAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099768:ENSDART00000166363:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.017
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(41.3=100)
A:
NA
C2:
PF127962=Ank_2=PD(25.0=39.7),PF0002325=Ank=WD(100=56.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCATATCGCTTGTGCCTGT
R:
ATTTTGTGCGTCGATGTTGGC
Band lengths:
279-833
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]