RnoINT0017751 @ rn6
Intron Retention
Gene
ENSRNOG00000006717 | Ankrd26
Description
ankyrin repeat domain 26 [Source:RGD Symbol;Acc:1310736]
Coordinates
chr4:150611932-150612379:-
Coord C1 exon
chr4:150612265-150612379
Coord A exon
chr4:150612106-150612264
Coord C2 exon
chr4:150611932-150612105
Length
159 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCA
5' ss Score
7.87
3' ss Seq
CCTTGATGCAATAACAACAGGCT
3' ss Score
2.91
Exon sequences
Seq C1 exon
GACTGCCCTACACCTTGCCTGTGCTTATGGTCACCCAGAAGTGGTGACTCTCTTAGTAGAGAGGAAATGTGAGATAGATGCCTGTGACAGCGAGAACAGCACAGCTCTCATTAAG
Seq A exon
GTACCAGCAGCCAGCGCTTCCAACTGAGATGCATCTGATTTAAATACTTGGGGGCAAAAAGCCATCGGTGTGATTTAAATACAGTAATGAGTAAAACCTAAACTATATTCGCCTTGAATTCCTAAACTGGGTATCTTTTCCTTGATGCAATAACAACAG
Seq C2 exon
GCTGTACAGTGCCAGGAAGAAGAATGCGCAGCTATACTGCTGGACCACGGGGCTGATACGAACGTGACAGACAGCAGCGGCAACACTGCCCTCCACTACGCGGTCTACTGTGAGAGCACGTCCATAGCAGCCAAACTGCTCGCACGCGGCGCAAATATAGAAGCCAAAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006717:ENSRNOT00000073562:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002325=Ank=PD(90.9=76.9),PF127962=Ank_2=PU(2.2=5.1)
A:
NA
C2:
PF127962=Ank_2=FE(61.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTTGCCTGTGCTTATGGT
R:
AGTTTGGCTGCTATGGACGTG
Band lengths:
242-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]