GgaINT0109005 @ galGal3
Intron Retention
Description
NA
Coordinates
chr1:26093425-26093956:+
Coord C1 exon
chr1:26093425-26093539
Coord A exon
chr1:26093540-26093782
Coord C2 exon
chr1:26093783-26093956
Length
243 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
TTTGTGTGTGTTGTTTCCAGGCA
3' ss Score
10.28
Exon sequences
Seq C1 exon
GACACCACTGCATCTTGCTTGTGCAAATGGACATGCGGATGTCGTTACGTTTCTAGTAGAAAGCAAGTGTAAGCTAAATCTTTTTGACAATGATAACAGATCACCACTGATGAAG
Seq A exon
GTAAGTAGAACATGTTATGCTGCTGCAACTAGGAATTATTTCTTATGTATTAAATGATGTCTTTCCAGATTCTTTACATAAATCTGTGTAGAAACATGCAAGCTGTAATCGGTGTGTGCTAGGTGTGTGCTAGCTCATCTTAGAAGATGCTTTTATATTCCAGGAGTGGGAAGTTGTAGTACTTGTGACACAATGAAATATGACTGCTGGAAGTTTTACCTTTTTTGTGTGTGTTGTTTCCAG
Seq C2 exon
GCAGTACAATGCCAGCAAGAAAAATGTGTGGCAATCCTGCTGGAGCACGGTGCTGATCCGAACTTGGCAGATGCTAACGGCAACACTGCCCTTCACCTGGCTGCTGTAGCTCCTAACACATTTCTAGCAGGGATGTTAATTGAGCACAATGCCCATATTGATGCTCAGAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009104:ENSGALT00000014827:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.017
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(67.4=63.9),PF0002325=Ank=WD(100=34.0)
A:
NA
C2:
PF127962=Ank_2=PD(25.0=24.5),PF0002325=Ank=WD(100=35.1),PF138571=Ank_5=PU(27.3=16.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCACTGCATCTTGCTTGT
R:
TTCTGAGCATCAATATGGGCA
Band lengths:
284-527
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]