MmuINT0015546 @ mm9
Intron Retention
Gene
ENSMUSG00000007827 | Ankrd26
Description
ankyrin repeat domain 26 [Source:MGI Symbol;Acc:MGI:1917887]
Coordinates
chr6:118508956-118509403:-
Coord C1 exon
chr6:118509289-118509403
Coord A exon
chr6:118509130-118509288
Coord C2 exon
chr6:118508956-118509129
Length
159 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCA
5' ss Score
7.87
3' ss Seq
CCTTGATGCACTAACACCAGGCC
3' ss Score
3.29
Exon sequences
Seq C1 exon
GACTGCTCTACATCTTGCCTGTGCTTACGGCCACCCAGAAGTGGTGACTCTCTTAGTAGAGAGAAAATGTGAGATAGATGCCCGTGACAGCGAGAGCAGCACGGCCCTCATTAAG
Seq A exon
GTACCAGCAGCCAGCACTTCTGGCTGAATTGCGTCTCATTTAAACACTTGGGGCATAAAAGACCTCGATTTGATTTAAATATAGTAATAAGTAAAGCCGACAATGTGTGTATTTTGAATCCCTAAGCTGATGATTTTCTCCTTGATGCACTAACACCAG
Seq C2 exon
GCCGTGCAGTGCCAGGAGGAAGAATGTGCAGCCATACTGCTGGACCACGGGGCCGATCCAAATGTGATGGACAGCAGCGGCAACACCGCCCTCCACTACGCGGTCTACAGTGAGAACACGTCCATGGCAGCCAAACTGCTCGCACACAATGCAAACATAGAAGCCAAAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007827-Ankrd26:NM_001081112:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.103
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(40.4=100)
A:
NA
C2:
PF127962=Ank_2=PD(24.5=39.7),PF0002325=Ank=WD(100=56.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCTTGCCTGTGCTTACGG
R:
CATTGTGTGCGAGCAGTTTGG
Band lengths:
257-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: