BtaINT0008311 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MIB1]
Coordinates
chr26:103626-104078:-
Coord C1 exon
chr26:103962-104078
Coord A exon
chr26:103800-103961
Coord C2 exon
chr26:103626-103799
Length
162 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
TCTTGGTGCATCACTGACAGGCC
3' ss Score
5.22
Exon sequences
Seq C1 exon
AGGACTGCCCTCCACTTGGCCTGTGCCAATGTCCATTCAGTGGTGGTCACTCTGCTCCTGGAGAGAAAATGCCTGCTTAACCTCTGTGACAATGAAAACAGGACAACACTGATGAAG
Seq A exon
GTATGGGGCAGCGAACCGTGTCCACATGAGGTGGATGTGATTTAACTACTGAGACTAAAAGTGAATTCATCTCATTAAGATATAGCAAACCAGTGAAGCTTGTCGACTGTTTACTTGGAATTTCTAGAATTTACACTCTGTTTCTTGGTGCATCACTGACAG
Seq C2 exon
GCCATAGCATGCCAAGAAGACGAGTGTGCGACTCTTCTGCTGGAGCATGGTGCCGACCCAAATGCCATGGACGTCTGTGGAAACACGGCGCTCCACTTCGCTGTCTTTTGCCAGAATATATCACTTGCAGCAAAGCTGCTTTCCTGTGATGCCAATATAGAAGCCAGGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040222:ENSBTAT00000025538:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(40.4=100)
A:
NA
C2:
PF127962=Ank_2=PD(24.5=39.7),PF0002325=Ank=WD(100=56.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGTGCCAATGTCCATTCA
R:
GGCATCACAGGAAAGCAGCTT
Band lengths:
252-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]