HsaINT0008660 @ hg19
Intron Retention
Gene
ENSG00000107890 | ANKRD26
Description
ankyrin repeat domain 26 [Source:HGNC Symbol;Acc:29186]
Coordinates
chr10:27381335-27382451:-
Coord C1 exon
chr10:27382278-27382451
Coord A exon
chr10:27381442-27382277
Coord C2 exon
chr10:27381335-27381441
Length
836 bp
Sequences
Splice sites
5' ss Seq
AAGGTATAG
5' ss Score
7.98
3' ss Seq
TTGTTTTTGCTGTCTTACAGGAT
3' ss Score
12.23
Exon sequences
Seq C1 exon
GCTGTACAATGCCAGGAAGAGAAATGTGCAACTATTCTGCTAGAACATGGTGCTGATCCAAATCTTGCGGATGTCCATGGCAACACTGCTCTTCACTATGCTGTCTATAATGAGGACATATCAGTAGCAACAAAGCTGCTTTTGTATGATGCAAATATTGAAGCAAAAAACAAG
Seq A exon
GTATAGATCAACCAACTTTATTTTTACAGTATTTGAAATGCGTTTGTTTCAACAGTGACATATGTAAGGGTTAGTTTTCTGTATTTGGAAGCGCAAGCATTCCCTGACTGAAAGTATTTTAAAATAACTTAATTGTCTAAGATTTTACTTTAAATGTTGATACTTTTAAAGAAGCATTAGGCAGTACACCTTTCTTTTATGCATTTATTGTAAATACTTGTGAAAACACAATTTGTTAAAGGCAAATCTTTTTTTTTTTTGAGACAGAGTCTTGCTCTGTCTCCCAGTCTAAAGTGCAGAGGCGCGATCTCGGCTCACTGCAACCTCTGCCTCTGCCTCCCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTACCCACCACCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTTGCCATGTTGGCCAGGCGGGCCTCGAACTCCTGACCTCAGGTGATCCACCCGCCTCAGCCTCTCAAAGTGCTGATATTACAGGTGGGAGCCACTGTGCTCAGCCTAGAAGCTCTTGGTTTTGATGGGAAACAATACAATGAATACAATATGCCATGCCAAATGATGTGATAGAAGCAAATATTCTTAGAACCGGTAAAAATTTGAAGTGAGTTTTGGAGATGAGTGGAGTTCATGTGGTGAGGCAGAGGAGGGGTGTTTCCAAGGGAAGCAAGTGTTTTTTATTTGTTTTCTATTTTATATGTTTCAGTTCAAAGGATCTGACATAGAGTTTTCAGTTCAGCCGAGAATTATGTAATTTTATGCATTTTAACTTGTTTTTGCTGTCTTACAG
Seq C2 exon
GATGACCTCACACCACTTTTACTTGCAGTAAGTGGAAAAAAGCAGCAAATGGTGGAATTTTTAATAAAGAAAAAAGCAAATGTAAATGCAGTAGATAAGTTGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107890-ANKRD26:NM_014915:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(44.9=100),PF127962=Ank_2=PD(75.7=96.6)
A:
NA
C2:
PF0002325=Ank=WD(100=91.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTACAATGCCAGGAAGAGA
R:
TTTCCAACTTATCTACTGCATTTACA
Band lengths:
280-1116
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)